FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90744
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3584739.50343824385084No Hit
CATAGAAGAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG43884.835581415851186No Hit
CATAGAGGGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT16781.8491580710570394No Hit
CATAGACTTCAGCCCTCACAAGCCTTACCTCAAATGCCAGGCTCTATGAG16611.8304240500749362No Hit
CATAGACACATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA16481.816098034029798No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTAAAGTGCTGTACTT16091.7731199858943842No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG11001.2122013576655206No Hit
CATAGAGGGTGCTCCTGTACTGGGTAGTGGTAGTCTATGAGACCAAGTCT9941.095389226835934No Hit
CATAGAGCTATCTGGCAAAAACCCATCTAAAAAAATACAAACATTAGCCA9261.02045314290752No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACACCTGTAATCACAGC8940.9851891034117958No Hit
CATAGACACATGTAGGATGGGGTGGCTGGGCATTGCTCTTGACATCTCTA8190.9025390108436923No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACCAAAAACAATACAAAAAT7830.8628669664110025No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTACCGTATGGTATATTTTCTAAAG7700.8485409503658644No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTAGTCTATGAGACCAAGTCT7260.8000528960592436No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAATCCCAGCACTTT5880.6479767257339328No Hit
CATAGACACATGTAGGATGGGGTGGCTTCCCTTACACCTTCTGCCATGAT5480.6038966763642776No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAAAATACAAAAATTAG5080.5598166269946222No Hit
CATAGATCATGGGACTTCAGCATGGGCATTGCTCTTGACATCTCTATGAG4760.524552587498898No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTTCTATGTGCCATGA4660.5135325751564842No Hit
CATAGAGGTGTCCTTTCCCCACTTTACTCTGCACATCTCCTTCCTGCCAT4370.48157453936348404No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAGTAATAGCACTTT4120.4540245085074495No Hit
CATAGAAGCATGGAAGACAAACAGCATGGCGGTGTTTGCAGATTTGGACC3990.4396984924623116No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAATCACAGCACTTT3630.4000264480296218No Hit
CATAGACACATGTAGGATGGGGTGGCTGTCATGATTATCACCTTCTATGA3530.38900643568720794No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTATTAAAAATAGAAAAATTAG3530.38900643568720794No Hit
CATAGACACATGTAGGATGGGGTGGCCTCTCCTTCACTTTCTGCCATGAT3190.351538393723001No Hit
CATAGATCATGGGACTTCAGCATGGCAGTGTTTGCAGATTTGGACCTGCG3020.33280437274089747No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG2880.3173763554615181No Hit
CATAGAAAGTCTGGACCAAGTGCCTTACCTCAAATGCCAGGCTCTATGAG2480.27329630609186284No Hit
CATAGAGGTGTCCTTTCCCCACTTTACACTGACGACATGGTTCTACACAT2400.26448029621793173No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACGCCTATAATTCCAGC2280.25125628140703515No Hit
CATAGAAAATAATGTGGCTGGGCATTGCTCTTGACATCTCTATGAGACCA2170.23913426783037997No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGC2110.23252226042493168No Hit
CATAGAGGTGTCCTTTCCCCACTTTACTCTGTATTTCTCCTTCCTGCCAT2090.23031825795644892No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCATGCCTATAATTCCAGC2070.22811425548796616No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGCTCTATGTGTAGCCAGTAGCAAG2070.22811425548796616No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTATTATCCTAGCACTTT2040.224808251785242No Hit
CATAGACACATGTAGGATGGGGTGGGCATTGCTCTTGACATCTCTATGAG1970.2170942431455523No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA1960.21599224191131094No Hit
CATAGAAGAGTGAGACTTGAGATGGGAGGATAGGTCAAGGTGGGAGGATG1870.2060742308031385No Hit
CATAGAACCAAAAATGGCTAGGCATGGGCATTGCTCTTGACATCTCTATG1830.201666225866173No Hit
CATAGACACATGTAGGATGGGGTGGCTCATGCGTGTCATCCCAGCCCTTT1830.201666225866173No Hit
CATAGAACCAAAAATGGCTAGGCATGTGGCTCACACCTGTAATCACAGCA1820.20056422463193158No Hit
CATAGAACCAAAAATGGCTAGGCATGGTGGCTCACACCTGTAATCACAGC1790.19725822092920742No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAAAAATACAAAAATTA1760.1939522172264833No Hit
CATAGACACATGTAGGATGGGGTGGCTCACGTGTGTAATCTCAGCACTTT1730.19064621352375916No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1660.18293220488406947No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTAAAAAAATTACAAAAATTAG1620.17852419994710395No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG1570.17301419377589702No Hit
CATAGAACCAAAAATGGCTAGGCATGTTGGCTCACACCTGTAATCACAGC1560.17191219254165563No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG1510.16640218637044873No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC1480.1630961826677246No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTATAAAAAATATGCAAAATTA1470.1619941814334832No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1470.1619941814334832No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1440.15868817773075905No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1380.15207617032531076No Hit
CATAGAACTGTTTAAGAGAAGTCAGCGATGTTCCATGTGTGTGCGATGTT1330.14656616415410384No Hit
CATAGAACCAAAAATGGCTAGGCATGTCTATGAGACCGGTCTGTTCGGCC1320.14546416291986247No Hit
CATAGAAAATAATGTGGCCGGGCATGGTAGCTCATGCCTGTAATCCCAGT1320.14546416291986247No Hit
CATAGAGCAGACAAACTTGCAAAAGACTACACTGACACACATAGAGCAGA1270.13995415674865555No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1270.13995415674865555No Hit
CATAGATCATGGGACTTCAGCATGGTGGTGTTTGCAGATTTGGACCTGCG1250.1377501542801728No Hit
CATAGACACATGTAGGATGGGGTGGCACACACCCATAGTCCCAGCTACTC1220.13444415057744866No Hit
CATAGAAAAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG1210.13334214934320726No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGC1210.13334214934320726No Hit
CATAGAGGTGTCCTTTCCCCACTTTATGTTTTTGTTTGCTTTGTCAAAGA1190.1311381468747245No Hit
CATAGAGGTGTCCTTTCCCCACTTTATGTTTTCGTTTGCTTTGTCAAAGA1190.1311381468747245No Hit
CATAGACACATGTAGGATGGGGTGGCGGTAATCACGAGGTCAAGGTGGGA1150.12673014193775897No Hit
CATAGAAGCATGGAAGACAAACAGCATGGGCATTGCTCTTGACATCTCTA1130.12452613946927621No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1130.12452613946927621No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTATATTTTCTAAAGCCTGGG1120.12342413823503483No Hit
CATAGAACCAAAAATGGCTAGGCATGTTCGGCAATAGGAAGGTTGGGGTG1110.12232213700079345No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGTTCACTCCTGTAATCCCAGC1090.12011813453231068No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAAAGTTAATTAAAAAA1060.11681213082958652No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG1060.11681213082958652No Hit
CATAGACTGGTCTCGAACTCCCAACCTCAGGGTGATCTGCCCACCTTTGC1050.11571012959534514No Hit
CATAGACTGGTCTCGAACTCCCAACCTCAAGTGATCTGCCCGTCTCACCC1000.11020012342413824No Hit
CATAGAGGTGTCCTTTCCCCACTTTATGTTTTTGTTTGCTTTGTCGAAGA990.10909812218989685No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGCTTTGGACCTGCG970.10689411972141409No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGGATGATCAATGCTGCTTCTAT930.10248611478444855No Hit
CATAGACACATGTAGGATGGGGTGGCACAGATCATACTGGCTGGGCACAG920.10138411355020717No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAATATACAAAAATTAG920.10138411355020717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)