FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71523
Sequences flagged as poor quality0
Sequence length150
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1827425.549823133817096No Hit
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT59678.342770856927142No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG55107.703815555835186No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG45346.339219551752582No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG41585.813514533786335No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC22213.105294800274038No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG17342.424394949876264No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG17262.4132097367280454No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT15372.1489590761013937No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC8551.1954196552158047No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA8251.153475105909987No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA7661.0709841589418787No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT7351.0276414579925337No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT7010.9801043021126072No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT6140.8584651091257358No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT5770.8067334983152272No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA5680.794150133523482No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT5600.7829649203752639No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT5470.7647889490094095No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG5330.745214826000028No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT5190.7256407029906464No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT3350.4683808005816311No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA3320.4641863456510493No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGTGGGTTGAGGGAGTCTTCTCTATG2230.31178781650657833No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC2200.30759336157599654No Hit
CATAGAGCAACCCCAGCAGTTTGAGACCATGGAGAGAATAATCCGTCTAT2040.28522293527956044No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT1980.27683402541839686No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGCTGGTGTTTTCCTTGATCTATG1540.21531535310319758No Hit
CATAGATGGGACAGCGACAATGACAGTACGGTGCATAAAAACTGTCGGAG1410.19713938173734324No Hit
CATAGATCTAGCCCATCACTTCAGCATCAGCAGGCCCTTCAGCATCATTT1390.19434307845028873No Hit
CATAGATGGTATTTGAGTGGGGAAACAGAGCCCGTTCTCTCTGTTGTGTC1380.19294492680676145No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTACGGGTCCTAAATGTC1300.1817597136585434No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGAGCATGCCTTTGAT1230.1719726521538526No Hit
CATAGATCTAGCCCATCACTTCAGCAACACTGACGAATGAGGAAACAGGC1220.17057450051032536No Hit
CATAGACCAGTACGCCTTACCCCTTGACACTGACGAATGAGGAAACAGGC1170.16358374229268904No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTGTCTGAATGATGGGAGTGTCTGC1160.1621855906491618No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC1150.16078743900563455No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG950.13282440613508942No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAGTTGTGGAAAGTGCAATGAGTC910.12723179956098038No Hit
CATAGACCAGTACGCCTTACCCCTTGACACTACGAATGAGGAAACAGGCA880.1230373446303986No Hit
CATAGATTCAGTTTACTTAGAGGCAGACACTGACGAATGAGGAAACAGGC860.1202410413433441No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT850.11884288969981685No Hit
CATAGAAGGAACAGCAGAGAGGGCAGACACTGACGAATGAGGAAACAGGC840.11744473805628958No Hit
CATAGAACACGAAGATTTCAGATTAGCCTGGTAGCAGGCCCTTCAGCATC820.11464843476923507No Hit
CATAGACCAGTTACCACAAGAAGCAATGAGACAGTTGTGGAAAGTGCAAT810.11325028312570783No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG800.11185213148218055No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGTCGTCAGTGTACCCTGGG790.1104539798386533No Hit
CATAGAAGGAACAGCAGAGAGGGCAGAATGATGGGAGTGTCTGCTGGTCT770.10765767655159879No Hit
CATAGATCTCACCGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT730.10206506997748976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)