FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28168
Sequences flagged as poor quality0
Sequence length150
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAAGAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG463216.444191990911673No Hit
CATAGACTTCAGCCCTCACAAGCCTTACCTCAAATGCCAGGCTCTATGAG20117.139307015052541No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA16425.8293098551547855No Hit
CATAGAGGGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT14054.9879295654643565No Hit
CATAGACACATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA11304.011644419199091No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGCCATCACAGTTCATTG8232.9217551831865944No Hit
CATAGAGGGTGCTCCTGTACTGGGTAGTGGTAGTCTATGAGACCAAGTCT7982.8330019880715707No Hit
CATAGACACATGTAGGATGGGGTGGCACACTGCCATCACAGTTCATTGTA7722.7406986651519456No Hit
CATAGACTTCAGCCCTCACAAGCCTTGGTATATTTTCTAAAGCCTGGGAT7632.7087475149105367No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTAGTCTATGAGACCAAGTCT5501.952570292530531No Hit
CATAGAAAATAATGTGGCCGGGCATGGGCATTGCTCTTGACATCTCTATG4891.7360124964498722No Hit
CATAGACACATGTAGGATGGGGTGGCTGGGCATTGCTCTTGACATCTCTA4671.657909684748651No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACACTGGAGACAGCCGCTCA4601.6330587901164442No Hit
CATAGAAAATAATGTGGCTGGGCATTGCTCTTGACATCTCTATGAGACCA4291.5230048281738142No Hit
CATAGATCATGGGACTTCAGCATGGGCATTGCTCTTGACATCTCTATGAG4061.4413518886679921No Hit
CATAGACTTCAGCCCTCACAAGCCTTACTCTTCTATATCCTCTTGCCTCC4061.4413518886679921No Hit
CATAGAAAGTCTGGACCAAGTGCCTCACACTGACGACATGGTATATTTTC3521.2496449872195399No Hit
CATAGACTGGTCTCGAACTCCCAACCCACTGACGACATGGTATATTTTCT3421.2141437091735303No Hit
CATAGACACATGTAGGATGGGGTGGCTGTCATGATTATCACCTTCTATGA3331.1821925589321216No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGACGACATGGTATATTT3181.1289406418631072No Hit
CATAGAAAGTCTGGACCAAGTGCCTTACCTCAAATGCCAGGCTCTATGAG2941.0437375745526838No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC2610.926583357000852No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTACCGTATGGGATCAGACTTTATG2270.8058790116444192No Hit
CATAGACTGGTCTCGAACTCCCAACCACCTATCTACCCCCGGTCTATGAG2240.7952286282306162No Hit
CATAGACACATGTAGGATGGGGTGGGCATTGCTCTTGACATCTCTATGAG2010.713575688724794No Hit
CATAGAAGAGTGAGACTTGAGATGGGATAGGTCAAGGTGGGAGGATGGTC1960.6958250497017893No Hit
CATAGAACCAAAAATGGCTAGGCATGGGCATTGCTCTTGACATCTCTATG1590.5644703209315536No Hit
CATAGAAGAGTGAGACTTGAGATGGGACACTGACGACATGGTTCTACACA1490.5289690428855439No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTGCTACTGGGATCAGACTTTATGT1430.5076682760579381No Hit
CATAGAAAAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG1340.4757171258165294No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTACACTGACGACATG1290.4579664867935246No Hit
CATAGATGAAAGACAAGCAGGGAAGCCAGCAAGGGAACAAAACTCTATGA1180.4189150809429139No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTTGGTCTCTGACTGT1160.411814825333712No Hit
CATAGAGGGTGCTCCTGTACTGGGTGCTCCTGTACTGGAGACAGCCGCTC1120.3976143141153081No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTAACCACCTATCTACCCC1070.37986367509230334No Hit
CATAGAGCTATCTGGCAAAAACCCATCTTGGTCTCTCTGACTGTGTTAAT1040.3692132916785004No Hit
CATAGAGGTGTCCTTTCCCCACTTTACACTGACGACATGGTTCTACACAT1030.36566316387389947No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTATATTTTCTAAAGCCTGGG940.33371201363249076No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAATGCCATGATTGTAAGTTTCT940.33371201363249076No Hit
CATAGAGGTGTCCTTTCCCCACTTTAACACTAACCACCTATCTACCCCCG900.31951150241408693No Hit
CATAGAGGGTGCTCCTGTACTGGGTGTGCTGGGTAGTGGTAGTCTATGAG840.2982107355864811No Hit
CATAGACACATGTAGGATGGGGTGGCTCCTGTGCTGGGTAGTGGTAGTCT800.2840102243680772No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGGATGATCAATGCTGCTTCTAT730.2591593297358705No Hit
CATAGATCATGGGACTTCAGCATGGCTGTCATGATTATCACCTTCTATGA680.24140869071286566No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTGCTACCGTATGGTATATTTTCTA670.2378585629082647No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACACTGACGACATGGTTCTA650.23075830729906277No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAATGCCAGCAAGGGAACAAAAC600.21300766827605794No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGTGCTGGGTAGTGGTAGTCT590.20945754047145695No Hit
CATAGAGGGTGCTCCTGTACTGGCTGTGCTGGGTAGTGGTAGTCTATGAG530.18815677364385117No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACACTAACCACCTATCTACC510.18105651803464923No Hit
CATAGAACCAAAAATGGCTAGGCATGTCTATGAGACCAAGTCTCTGCTAC490.17395626242544732No Hit
CATAGACACATGTAGGATGGGGTGGTATATTTTCTAAAGCCTGGGATCTA490.17395626242544732No Hit
CATAGACACATGTAGGATGGGGTGGCTGCCATGATTGTAAGTTTCTTGAG490.17395626242544732No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCCCTATGAGACCA470.16685600681624538No Hit
CATAGAAGAGTGAGACTTGAGATGGGATGGAGACAGCCGCTCACCTCTAT460.16330587901164442No Hit
CATAGAGAGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT400.1420051121840386No Hit
CATAGAGCAGACAAACTTGCAAAAGACTCTGCTACCGTATGCCATGATTG390.13845498437943765No Hit
CATAGAAAGTCTGGACCAAGTGCCTCACACTAACCACCTATCTACCCCCG360.12780460096563476No Hit
CATAGAGGGTTGGAGATGGGGAAAGGTCAAGGTGGGAGGATGGTCTATGA350.1242544731610338No Hit
CATAGAAAGTCTGGACCAAGTGCCTCATTGGCTGGTATATTTTCTAAAGC320.1136040897472309No Hit
CATAGAACATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA320.1136040897472309No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGACAGCCGCTCACCTCTATGAG310.11005396194262992No Hit
CATAGACCCATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA310.11005396194262992No Hit
CATAGACACATGTAGGATGGGGTGCCATCACAGTTCATTGTATTCTCTAT300.10650383413802897No Hit
CATAGACTGGTCTGTTCGGCCACTCATGTCTATGAGACCAAGTCTCTGCT300.10650383413802897No Hit
CATAGAAAATAATGTGGCCGGGCATGGAGACAGCCGCTCACCTCTATGAG290.102953706333428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)