FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806414

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806414
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66075
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1448721.925085130533482No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA65129.855467272039348No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT35875.428679530836171No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT19022.878547105561861No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG18262.7635262958758986No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA13552.0506999621642072No Hit
CATAGACCCTGGATTAGCATGAGGAACATGGCTTCCCATTTCAGACAAGG12891.950813469542187No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT12711.9235716988270906No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG11801.7858494135452139No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA10101.5285660234581915No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG7631.154748391978812No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC5930.8974650018917896No Hit
CATAGAAAGGCCTTCCTGTATCAGTCATCACTTATACGCCTCCCTGTCTA5250.7945516458569807No Hit
CATAGAGGTGAGCGGCTGTCTCCAAACTGGACAATGAGAGGATCTATGTG5240.7930382141505864No Hit
CATAGATGACTTGGGGGAAAATGGTAGAAACAGCCAGTTTTCCCTTCTAT5100.771850170261067No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTGGAAGTACACAAAAAGGGC4470.6765039727582293No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT4410.6674233825198638No Hit
CATAGATGGAGAGAGTGAGGGAAAGGAAATTATGGGAGCCCTGTGAAACG4290.6492622020431328No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG4250.6432084752175559No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT4060.614453272796065No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT4000.6053726825576996No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA3930.5947786606129398No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCATCACTTATACGCCTCCC3520.5327279606507757No Hit
CATAGAATAGCCAGCAGAAGGAAGCAACCCAAATGGACATTTCACTTATA3240.49035187287173665No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTTGGAAGTACACAAAAAGGG3230.4888384411653424No Hit
CATAGACTGTCATTGCTTGCCCATTGGAAGTTAGGAAGCCAGCTCTATGT3070.46462353386303445No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCCCTTAAGAAAATTTAATTG3010.45554294362466896No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA2950.44646235338630347No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT2830.4283011729095725No Hit
CATAGATGAAAAGTCAAGCCAGCACAAATATTTGGAAACTAATTCCACTG2790.42224744608399545No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTAAGGCTGGCAAAGTTCCAA2780.4207340143776012No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCACC2680.4055996973136587No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG2660.40257283390087023No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT2620.3965191070752932No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGAACCACAGGCATGTGCCAC2550.3859250851305335No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACGCCAC2510.3798713583049565No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC2470.3738176314793795No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA2430.3677639046538025No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG1950.29511918274687854No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA1880.2845251608021188No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCGTACAACCCCTTAAGAAAA1600.24214907302307984No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGATTGGAACTTTGCCCCAAAAG1590.24063564131668558No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTATGCAAGACTAGGCAATTT1570.23760877790389706No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG1530.23155505107832008No Hit
CATAGAAGTTCTGATCCACATTCACGTATACGCCTCCATCACTTATACGC1500.22701475595913734No Hit
CATAGATGGAGAGAGTGAGGGAAAGGTGAATGAGAGTCCCTGTTGCTCTA1500.22701475595913734No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT1430.2164207340143776No Hit
CATAGACATGCTAACATTTCTGGGGATAGACATGCTAACATTACTGGGGA1370.2073401437760121No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTTGTA1370.2073401437760121No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG1350.20431328036322363No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA1210.1831252364737041No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG1210.1831252364737041No Hit
CATAGACCTCCTGTTTGACCATTTTGACTGTTATTACAAAATAATGTTAA1180.17858494135452138No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCGCCAG1160.17555807794173287No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCAT1160.17555807794173287No Hit
CATAGACTGTCATTGCTTGCCCATTGTTATTGGATGGGATCTATGTGTAG1120.1695043511161559No Hit
CATAGATTGAGCTTAAATGATCTGTGCAAGGTTAAACAATATCCAAATCC1090.16496405599697314No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG1050.15891032917139614No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA1050.15891032917139614No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCACACCAC1030.15588346575860765No Hit
CATAGATGAAAAGTCAAGCCAGCACACACTGAACATAGCCTTTGGGGTTT1020.1543700340522134No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCAACACTGGGGACTGTGAC1020.1543700340522134No Hit
CATAGATGGAGAGAGTGAGGGAAAGGGGGTGCTGTTGTAAACCCCATCTC1000.1513431706394249No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT960.1452894438138479No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA960.1452894438138479No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGAAGTCAAATTGTCC920.13923571698827092No Hit
CATAGAATCCTTTCCCCATTGCTTGTACACTGAATGAGAGTCCCTGTTGC920.13923571698827092No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG910.13772228528187666No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACTCCACAT860.13015512674990543No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCCAGATGATATGAACCCAA820.1241013999243284No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA750.11350737797956867No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTCCACATGATGGACATCTA740.11199394627317444No Hit
CATAGAGTTCAAATGGCCAATCAGGTTACGGAGCAGGAATTAGACTCTTG710.10745365115399168No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGTCACCTGCCAC710.10745365115399168No Hit
CATAGACATGCTAACATTTCTGGGGATACGTAGCAGAGACTTGGTCTCAT710.10745365115399168No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGTTTACAGGCATATGCCAC690.10442678774120318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)