FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53866
Sequences flagged as poor quality0
Sequence length150
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAAGAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG575810.689488731296178No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA37386.939442319830691No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTCTGACTGTGTTAATTTAAAAGAA30285.621356699959158No Hit
CATAGACACATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA28485.287194148442431No Hit
CATAGAGGGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT28355.263060186388445No Hit
CATAGACTTCAGCCCTCACAAGCCTTACCTCAAATGCCAGGCTCTATGAG27735.147959751977129No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGACGACATGGTATATTT18043.3490513496454164No Hit
CATAGACACATGTAGGATGGGGTGGCTGGGCATTGCTCTTGACATCTCTA17233.198678201462889No Hit
CATAGAGGGTGCTCCTGTACTGGGTAGTGGTAGTCTATGAGACCAAGTCT14582.706716667285486No Hit
CATAGAAAATAATGTGGCTGGGCATTGCTCTTGACATCTCTATGAGACCA13122.43567370883303No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTACACTGACGACATG12762.368841198529685No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTAGTCTATGAGACCAAGTCT12412.303865146845877No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAACACTGCCATCACAGTTCATT11672.166487209000111No Hit
CATAGAACTCCATCATAAGTCAAAGAGCACACTGATGAGGGTATAAGGTC11422.120075743511677No Hit
CATAGAACTGTTTAAGAGAAGTCAGCGAGGGAACAAAACTCTATGAGACC9801.819329447146623No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC8991.668956298964096No Hit
CATAGACTTCAGCCCTCACAAGCCTTGCCATGATTGTAAGTTTCTTGAGT7301.3552147922622806No Hit
CATAGAGGTGTCCTTTCCCCACTTTACACTGACGACATGGTTCTACACAT6931.2865258233393977No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACACTGCCATCACAGTTCAT6741.2512531095681878No Hit
CATAGAGCAGACAAACTTGCAAAAGACTACACTGACGACATGGTATATTT6651.2345449819923515No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTCACATAGAGGTCAA5491.0191957821260165No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTTGGCTGTCATGATTATCACC5070.9412245201054468No Hit
CATAGACTTCAGCCCTCACAAGCCTTACACTGCCATCACAGTTCATTGTA4910.9115211821928488No Hit
CATAGAAAATAATGTGGCCGGGCATGGGCATTGCTCTTGACATCTCTATG4550.8446886718895036No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGGATGATCAATGCTGCTTCTAT4500.8354063787918167No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACACTGGAGACAGCCGCTCA3810.7073107340437381No Hit
CATAGACTTCAGCCCTCACAAGCCTTACACTGATGAGGGTATAAGGTCTA3760.6980284409460513No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGTGCTGGGTAGTGGTAGTCT3610.6701815616529908No Hit
CATAGAGCAGACAAACTTGCAAAAGACTCTGCTACCGTATGGTATATTTT3270.6070619685887202No Hit
CATAGATCATGGGACTTCAGCATGGAGGATGATCAATGCTGCTTCTATGA3170.5884973823933465No Hit
CATAGACACATGTAGGATGGGGTGGCTGTCATGATTATCACCTTCTATGA3160.586640923773809No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTATATTTTCTAAAGCCTGGG2860.5309471651876879No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAGTCTATGAGACCAAGTCTCTG2780.516095496231389No Hit
CATAGACACATGTAGGATGGGGTGGGCATTGCTCTTGACATCTCTATGAG2460.45668882040619313No Hit
CATAGAAGAGTGAGACTTGAGATGGGAGGATAGGTCAAGGTGGGAGGATG2170.40285152043960937No Hit
CATAGATCATGGGACTTCAGCATGGGCATTGCTCTTGACATCTCTATGAG2070.3842869342442357No Hit
CATAGACACATGTAGGATGGGGTGGCTGCCATGATTGTAAGTTTCTTGAG1620.300746296365054No Hit
CATAGACACATGTAGGATGGGGTGGTTATGTAGACAGGGATTGATCTCTA1570.29146400326736716No Hit
CATAGATCCACAAAGACCAAGAGTGTCACACTGCCATCACAGTTCATTGT1520.2821817101696803No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGACAGCCGCTCACCTCTATGAG1370.25433483087661973No Hit
CATAGATGAAAGACAAGCAGGGAAGCCAGACAGGATGCGCAGATGGTCTA1340.24876545501800765No Hit
CATAGAAAGTCTGGACCAAGTGCCTTACCTCAAATGCCAGGCTCTATGAG1340.24876545501800765No Hit
CATAGAAAGTCTGGACCAAGTGCCTCAGTCCACTGCCATCACAGTTCATT1330.24690899639847028No Hit
CATAGAGGGTTGGAGATGGGGAAAGGACTGCCATGATTGTAAGTTTCTTG1290.2394831619203208No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTGCTACCGTGCCATCACAGTTCAT1250.2320573274421713No Hit
CATAGAGGTGTCCTTTCCCCACTTTACACTGCCATCACAGTTCATTGTAT1240.23020086882263396No Hit
CATAGACACATGTAGGATGGGGTGGCTCCTGTGCTGGGTAGTGGTAGTCT1190.22091857572494708No Hit
CATAGATCCACAAAGACCAAGAGTGCCATCACAGTTCATTGTATTCTCTA1080.20049753091003603No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGACGACATGGTTCTACA1030.19121523781234917No Hit
CATAGACACATGTAGGATGGGGTGGTATATTTTCTAAAGCCTGGGATCTA1000.18564586195373706No Hit
CATAGACTTCAGCCCTCACAAGCCTGCCATCACAGTTCATTGTATTCTCT980.18193294471466231No Hit
CATAGACTGGTCTCGAACTCCCAACCACCTATCTACCCCCGGTCTATGAG950.1763635688560502No Hit
CATAGATCATGGGACTTCAGCATGGCGTCAGTGTTGGCTGTCATGATTAT920.1707941929974381No Hit
CATAGAACCAAAAATGGCTAGGCATGGGCATTGCTCTTGACATCTCTATG920.1707941929974381No Hit
CATAGAAAGTCTGGACCAAGTGCCTCACAGTTCATTGTATTCTCTATGAG910.16893773437790072No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACACTGACGACATGGTTCTA900.16708127575836335No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACACTGACGACATGGTATAT830.15408606542160175No Hit
CATAGAACCAAAAATGGCTAGGCATGTACACTGACGACATGGTTCTACAC750.13923439646530278No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAGACAGGATGCGCAGATGGTCT730.13552147922622804No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTCACTGACGACATGG710.13180856198715332No Hit
CATAGAAAGTCTGGACCAAGTGCCTCCGTATCCTCTTGCCTCCGTCCCTC680.1262391861285412No Hit
CATAGAGGGTTGGAGATGGGGAAAGGTGGAGGATGATCAATGCTGCTTCT640.11881335165039172No Hit
CATAGATCATGGGACTTCAGCATGGCTGTCATGATTATCACCTTCTATGA630.11695689303085435No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAAGAGTGCCATCACAGTTCATT620.11510043441131698No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAGGTCAAGGTGGGAGGATGGTC600.11138751717224224No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTATATTTTCTAAAGCCTGGGATC570.10581814131363013No Hit
CATAGACACATGTAGGATGGGGTGGAGACAGCCGCTCACCTCTATGAGAC570.10581814131363013No Hit
CATAGATCCACAAAGACCAAGAGTGTCATCACAGTTCATTGTATTCTCTA560.10396168269409276No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTTATGTAGACAGGGATTGATCTC560.10396168269409276No Hit
CATAGATCCACAAAGACCAAGAGTGTCTGTTCGGCCACTCATGTCTATGA540.10024876545501801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)