FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48224
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA2151044.604346383543465No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACATCTATGTGTAG17323.591572660915727No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT13772.855424684804247No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACCATG10462.1690444591904443No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAAGGGAGAATCTATGTGTA8881.8414067684140678No Hit
CATAGATGTTGTTGTTCTGTTGCCCATGTCGTCAGTGTAGAAGCTTTGAG8431.7480922362309224No Hit
CATAGAACCAACCCTGATTCTGCTGCTCACTCTTTGGGTTCTATGTGTAG7851.6278201725282018No Hit
CATAGAGGCGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA6211.2877405441274055No Hit
CATAGAACAATCAGGCACCCACCATGCTGAAGTCCCATGATCTATGTGTA6041.252488387524884No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAATTCTCTATGTG5321.1031851360318514No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGTGTGATCATATC5081.053417385534174No Hit
CATAGATCTCAAACAGCCTCTCCCAGGAAAGTTGGAACCTATCAGTGTCT3200.6635700066357001No Hit
CATAGATGTTGTTGTTCTGTTGCCCAATATGAACAGAAAGAAGCTCTATG3110.644907100199071No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCGAAAAACACCCTCTATGTGT3010.6241705374917054No Hit
CATAGATGAAAGAGCATTGGTTGTGACACCGAAAAACACCCTCTATGTGT2190.4541307232913072No Hit
CATAGAAAGGGACAAGGGCTCACTCTGCTGCTCACTCTTTGGGTTCTATG1990.41265759787657597No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTGTGTGGCCAACAGGAAGGTCTA1940.4022893165228932No Hit
CATAGAGCCATCATCATTTCTCACCCAGGGTAATTCTGGCCTTGTTCTAT1870.38777372262773724No Hit
CATAGATGTTGTTGTTCTGTTCCCCAATATGAACAGAAAGAAGCTCTATG1800.3732581287325813No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAGGACTTGGGGATCACACA1730.35874253483742535No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGTGCAACTATGGC1460.30275381552753816No Hit
CATAGACAAGCCTGCCAAGACCTCTCCTCTACAAAATTACAATTAGCTGG1440.29860650298606506No Hit
CATAGATAGCAGCAATCTCAGGCCTGGGAGACCCCATATCTACCAAAGAT1390.2882382216323822No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCGTGCTCTTGGC1350.27994359654943596No Hit
CATAGATCCCTGGCAAGAATTCCTCTTCTTCCTCCTCCTGTCTATGTGTA1280.26542800265428No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA1280.26542800265428No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAAATTCTCTTGACA1270.2633543463835435No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAACCTGTGTATATT1220.25298606502986065No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACCAAAAGCACAAG1160.2405441274054413No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTCCTCCGATGCTTATTACATTGT1140.23639681486396813No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA1080.2239548772395488No Hit
CATAGAAAGGGACAAGGGCTCACTCTCTGCTGCTCACTCTTTGGGTTCTA1070.22188122096881222No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGAAAGTTGGAACCTATCAGTGTC1060.21980756469807566No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA1030.21358659588586593No Hit
CATAGAGCCATCATCATTTCTCACCCAGGAAAGTTGGAACCTATCAGTGT1010.20943928334439285No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGTATGCAGTCTGT1000.20736562707365627No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG990.20529197080291972No Hit
CATAGATGTTGTTGTTCTGTTGCCCATACGGTAGCAGAAGCTTTGAGATT990.20529197080291972No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA920.19077637690776378No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA900.18662906436629065No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA880.18248175182481752No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTGCTGCTCACTCTTTG870.18040809555408094No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA870.18040809555408094No Hit
CATAGATCTCAAACAGCCTCTCCCAGAAGCTTTGAGATTTGTGTCTGTTC870.18040809555408094No Hit
CATAGACAAGCCTGCCAAGACCTCTCACACTGACCAAAAGCACAAGGGAG850.17626078301260784No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA820.17003981420039813No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAAATTCTCTTGAC800.16589250165892502No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGCCCGCGCAGAGCCTTCAGGTCA780.1617451891174519No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCACACTGACTATGGCTTAATGTTT740.15345056403450563No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA710.14722959522229595No Hit
CATAGATCCAGCTTCATCCATGTCCCTACAAAGGACAGGAACTCATCCTC710.14722959522229595No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCCATTGTCGCCTTCTCTTCTCTAT680.14100862641008627No Hit
CATAGAGGTGAGCGGCTGTCCCCACAAGTCCGCGCAGAGCCTTCAGGTCA640.13271400132714No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAAGTCA630.13064034505640346No Hit
CATAGATCCAGCTTCATCCATGTCCCAGTGTACTATGGCTTAATGTTTCT620.12856668878566688No Hit
CATAGGGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA610.12649303251493033No Hit
CGTAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA610.12649303251493033No Hit
CATAGATGTTGTTGTTCTGTTGCCCACTCTTTGGGTTCTATGTGTAGAAC600.12441937624419377No Hit
CATAGAAAGGGACAAGGGCGCACTCTAGCCTGGGAGACATCTATGTGTAG580.12027206370272064No Hit
CATAGACTCACTCTGTCACCCAAGCTAGCAGTGCAACCCCACCAGTCCCC580.12027206370272064No Hit
CATAGAGATCTTCTCGGCTTAGCGGCTGTCTCCACAAGTCCGCGCAGAGC570.11819840743198406No Hit
CATAGACAAGCCTGCCAAGACCTCTCTGTGCAAAATTCTCTTGACATAGT570.11819840743198406No Hit
CATAGATCCAGCTTCATCCATGTCCCTGAAAAGAACACGAATGAGGAAGA540.1119774386197744No Hit
CATAGATCTCAAACAGCCTCTCCCAGGGTAATTCTGGCCTTGTTCTATGT540.1119774386197744No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGTCTTCAGGTCA500.10368281353682814No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCTGCGCAGAGCCTTCAGGTCA490.10160915726609157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)