FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18858
Sequences flagged as poor quality0
Sequence length150
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA14467.66783328030544No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC14297.577685862763814No Hit
CATAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA13337.06861809311698No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT11786.246685756708029No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT10115.361119949093223No Hit
CATAGAGCCAAGGAAAGTTGAATGGAGACAGCCGCTCACCTCTATGAGAC8094.28995651712801No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG7363.9028529006257293No Hit
CATAGATCATGGGACTTCAGCATGGCTACACATGGCTATGCAATCTATGA5022.662000212111571No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTTCCTTCTGCTGGCTATTCTATG4832.5612472160356345No Hit
CATAGACAGGGAGGCGTATAAGTGATGTGCTTCTTTCAAAAGTCTGGTCT4822.5559444267684803No Hit
CATAGATCCCATCCAATAATAATGAACAAGCAATGGGGAAAGGATTCTAT4742.513522112631244No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGGAGACAGCCGCTCACCTC3741.9832431859157915No Hit
CATAGATCCCATCCAATAATAATGAGCAGAATTACCTCTGGATGGTCTAT3651.9355180825114011No Hit
CATAGATCCCATCCAATAATAATGAGCACACTGACGACATGGTTCTACAC3611.914306925442783No Hit
CATAGATCCTCTCATTGTCCAGTTTGGAGACAGCCGCTCACCTCTATGAG3291.7446176688938382No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGCACAGATCATTTAAGCTCAA3071.6279563050164387No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGACACTGACTGATACAGGAAG2561.3575140523915579No Hit
CATAGACCTTTGGGTTCATATCATCTGGAGACAGCCGCTCACCTCTATGA2501.325697316788631No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTATCCCCAGA2481.3150917382543217No Hit
CATAGATGCCCTTTTTGTGTACTTCCATGTGCTTCTTTCAAAAGTCTGGT2201.1666136387739952No Hit
CATAGATCCCATCCAATAATAATGAGCAATGGGCAAGCAATGACAGTCTA1370.7264821296001697No Hit
CATAGACAGGGAGGCGTATAAGTGATGACACTGACGACATGGTTCTACAC1230.6522430798600064No Hit
CATAGAAACCCCAAAGGCTATGTTCAAAATGGTCAAACAGGAGGTCTATG1220.6469402905928519No Hit
CATAGACAGGGAGGCGTATAAGTGATGGAGACAGCCGCTCACCTCTATGA1080.5727012408526885No Hit
CATAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT1050.5567928730512249No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA990.5249761374482977No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTCTCTGCTACCGTAC990.5249761374482977No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTGAAACCCTATCTCTA940.49846219111252515No Hit
CATAGATGTATACAAGCTGTCACAGACAACACTGACGACATGGTTCTACA910.48255382331106156No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAGCAATGGGCAAG800.4242231413723619No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATGTCTGTTATTCAAAGGTT800.4242231413723619No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGAATCTGTGAGTTGCTGATGC700.3711952487008166No Hit
CATAGATCCCATCCAATAATAATGAGCATAACAATGGGCAAGCAATGACA660.34998409163219857No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGTATCCCCAGAAATG660.34998409163219857No Hit
CATAGATGAAAGCCTGTTGAATTTATGATCTATCCAGGAATTTTATTTTA610.3234701452964259No Hit
CATAGATGCCCTTTTTGTGTACTTCCATAGATGCCCTTTTTGTGTGCTTC550.2916534096934988No Hit
CATAGATCCTCTCATTGTCCAGTTTGGTACGGTAGCAGAATTACCTCTGG540.28635062042634424No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGAGAC530.28104783115918974No Hit
CATAGATGTCCATCATGTGGAAGCTGGAGACAGCCGCTCACCTCTATGAG480.2545338848234171No Hit
CATAGACCTGGGCTTAGGGGCTATACAAGCAATGGGGAAAGGATTCTATG480.2545338848234171No Hit
CATAGACCTTTGGGTTCATATCATCTGGCTACACATGGCTATGCAATCTA480.2545338848234171No Hit
CATAGATCATGGGACTTCAGCATGGCTATGCAATCTATGAGACCAAGTCT480.2545338848234171No Hit
CATAGAGCCAAGGAAAGTTGAATGGAACACTGACTGATACAGGAAGGCCT440.23332272775479904No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAATGGGCAAGCAA430.2280199384876445No Hit
CATAGAACTTCACAAGGGCTTTAGGGCTACACATGGCTATGCAATCTATG430.2280199384876445No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGACTCTGTTATTCAAAGGTTTT420.22271714922048996No Hit
CATAGATCATGGGACTTCAGCATGGCTATGCAATCTGTGAGTTGCTGATG400.21211157068618094No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTATACGTGAATGTGGATCAGAA390.2068087814190264No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCCTATGAGACCAAGTCTCTGCT380.2015059921518719No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG380.2015059921518719No Hit
CATAGATCATGGGACTTCAGCATGGCGACAGCCGCTCACCTCTATGAGAC380.2015059921518719No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTCTCTGCTACCGTAA370.19620320288471738No Hit
CATAGATTTGTAAATTGCCTAGTCTTGCACAGATCATTTAAGCTCAATCT340.18029483508325378No Hit
CATAGAGCTGGCTTCCTAACTTCCAACAATGGGCAAGCAATGACAGTCTA320.16968925654894473No Hit
CATAGAGCTGGCTTCCTAACTTCCAATAACAATGGGCAAGCAATGACAGT310.1643864672817902No Hit
CATAGATGAAAGCCTGTTGAATTTATGAAATCTGTGAGTTGCTGATGCAT300.1590836780146357No Hit
CATAGATCCCATCCAATAATAATGAGCAATGGACAAGCAATGGGGAAAGG280.14847809948032664No Hit
CATAGAGGATCCCATCTGAGTTGGTCTCATAGATGGAGACAGCCGCTCAC280.14847809948032664No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACATAGATGCCCTTTTTGTGTG270.14317531021317212No Hit
CATAGATGTATACAAGCTGTCACAGACAACAACACTGACGACATGGTTCT260.13787252094601762No Hit
CATAGATTTGTAAATTGCCTAGTCTTGCATTGGAGACAGCCGCTCACCTC250.13256973167886307No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTCAATCCCCAGAAATGTTAGCAT230.12196415314455404No Hit
CATAGACAGGGAGGCGTATAAGTGATGTACGGTAGCAGAATTACCTCTGG220.11666136387739952No Hit
CATAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC190.10075299607593595No Hit
CATAGAAACCCCAAAGGCTATGTTCACACTGACTGATACAGGAAGGCCTT190.10075299607593595No Hit
CATAGACAGGGAGGCGTATAAGTGATGCACTGACGAATGGTTCTAACATA190.10075299607593595No Hit
CATAGATCCCATCCAATAACAATGGGCAAGCAATGACAGTCTATGAGACC190.10075299607593595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)