FastQCFastQC Report
Wed 8 May 2024
EGAF00005806487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114150
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3916134.306614104248794No Hit
CATAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC69996.131406044678055No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTT38673.3876478318002627No Hit
CATAGACACCATGCCTGGCTAATTTTTTGCGTTTTTAGTAGAGATGGGGT29282.565045992115637No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAACAA28462.493210687691634No Hit
CNTAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG25982.275952693823916No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACACTCA21901.9185282522996057No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGTGGTGTGGTG13431.1765221200175207No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT12881.1283399036355672No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAATCA12581.1020586946999562No Hit
CATAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA10130.8874288217257994No Hit
CATAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA9550.8366184844502846No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG7640.6692947875602278No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTTGTAGAGACAGAGTT7490.6561541830924222No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTGGTGCACATGCC5850.5124835742444153No Hit
CATAGACACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGT5640.49408672798948755No Hit
CATAGAGCCAAGGAAAGTTGAATGGACACTGACGACATGGTTCTACACAT5440.4765659220324135No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGTACCTGATTGGCCATTTGAAC4790.4196233026719229No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTATCCCCAGAAATGTTAGCATGT4710.4126149802890933No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTGAACCTGTCTCTACT3960.34691195795006574No Hit
CNTAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC3860.3381515549715287No Hit
CATAGACACCATGCCTGGCTAATTTTAAAATTAGTACCTATAATCTCAGC3810.33377135348226017No Hit
CATAGAAACCCCAAAGGCTATGTTCAGTGTAATAAATGGGGGCAAGGAAG3760.3293911519929917No Hit
CATAGACACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTT3650.31975470871660094No Hit
CATAGACACCATGCCTGGCTAATTTTTTGTATTAATCCCAGCTACTCAGG3630.3180026281208936No Hit
CATAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT3510.30749014454664914No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT3410.29872974156811216No Hit
CATAGACACCATGCCTGGCTAATTTTTAAATATTTTGTAGAGACCGGGTT3320.2908453788874288No Hit
CATAGAACCTCTTTTGGGGCAAAGTTCCAACCTTCCTAACCATGGGCATA3200.2803328953131844No Hit
CATAGACAGGGAGGCGTATAAGTGATGACACTGACTGATACAGGAAGGCC3150.2759526938239159No Hit
CATAGAGCCAAGGAAAGTTGAATGGAGACAGCCGCTCACCTCTATGAGAC3020.2645641699518178No Hit
CATAGACACCATGCCTGGCTAATTTTTTTGTGTTTTTGGTAGAGATGGGG2730.23915900131406043No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG2560.22426631625054755No Hit
CATAGAGGATCCCATCTGAGTTGGTCTATGTATCCCCAGAAATGTTAGCA2350.20586946999561978No Hit
CNTAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTT2200.1927288655278143No Hit
CATAGAAACCCCAAAGGCTATGTTCAAAATGGTCAAACAGGAGGTCTATG2150.18834866403854578No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG2150.18834866403854578No Hit
CATAGAGCTGGCTTCCTAACTTCCAACACTGACGACATGGTTCTACACAT2140.18747262374069207No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGAGAC2120.18572054314498468No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG2100.18396846254927726No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG2100.18396846254927726No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTGAAACCCCATCTCTA2050.17958826106000875No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTCTCATAGACCTGATTGGCCATT2020.17696014016644765No Hit
CATAGATTTGTAAATTGCCTAGTCTTGCATACACTGACTGATACAGGAAG2020.17696014016644765No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATGTCTGTTATTCAAAGGTT1950.17082785808147175No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTT1880.16469557599649584No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1860.16294349540078842No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTATCCCCAGAAATGTTAG1820.15943933420937362No Hit
CATAGATGCCCTTTTTGTGTACTTCCATGGTTCTACACATAGATGCCCTT1700.14892685063512923No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTCTCTAAATATACACTCA1690.14805081033727552No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA1670.1462987297415681No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGCTTTGGACCTGCG1670.1462987297415681No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCCGATTTGGACCTGCG1650.1445466491458607No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1630.1427945685501533No Hit
CATAGATCCCATCCAATAATAATGAGCAATGGGCAAGCAATGACAGTCTA1610.1410424879544459No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTACACTGACTGATACAGGAAGGC1610.1410424879544459No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATCTGTTATTCAAAGGTTTT1540.13491020586947No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATGATCTGTTATTCAAAGGT1530.1340341655716163No Hit
CNTAGACACCATGCCTGGCTAATTTTTTGCGTTTTTAGTAGAGATGGGGT1490.1305300043802015No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAGTCTATGAGACC1480.12965396408234778No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1420.12439772229522558No Hit
CNTAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAACAA1380.12089356110381076No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGCCCTGCG1350.11826544021024966No Hit
CATAGAACTTCACAAGGGCTTTAGGGACACTGACTGATACAGGAAGGCCT1350.11826544021024966No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1340.11738939991239597No Hit
CATAGATCATGGGACTTCAGCATGGTGGTGTTTGCAGATTTGGACCTGCG1320.11563731931668858No Hit
CATAGACCTTTGGGTTCATATCATCTGGCTACACATGGCTATGCAATCTA1300.11388523872098116No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGCGTATTCTAAATATACAATCA1280.11213315812527377No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG1280.11213315812527377No Hit
CATAGAACTTCACAAGGGCTTTAGGGCTACACATGGCTATGCAATCTATG1240.10862899693385895No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1180.10337275514673676No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTTCCTTCTGCTGGCTATTCTATG1150.10074463425317563No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)