FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49991
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA2581351.63529435298354No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT18363.672661078994219No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACATCTATGTGTAG14542.9085235342361626No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACCATG9401.8803384609229663No Hit
CATAGAGGCGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA7541.5082714888679962No Hit
CATAGAACAATCAGGCACCCACCATGCTGAAGTCCCATGATCTATGTGTA5351.0701926346742412No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAATTCTCTATGTG4290.8581544678042048No Hit
CATAGAACCAACCCTGATTCTGCTGCTCACTCTTTGGGTTCTATGTGTAG4240.8481526674801464No Hit
CATAGATCTCAAACAGCCTCTCCCAGGAAAGTTGGAACCTATCAGTGTCT3440.6881238622952132No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTGTCTCATAGAGGTTTCCTG2900.5801044187953831No Hit
CATAGAAAGGGACAAGGGCTCACTCTGCTGCTCACTCTTTGGGTTCTATG2830.5661018983417014No Hit
CATAGATGTTGTTGTTCTGTTGCCCAATATGAACAGAAAGAAGCTCTATG2240.4480806545178132No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA2170.43407813406413154No Hit
CATAGATGTTGTTGTTCTGTTGCCCATGTCGTCAGTGTAGAAGCTTTGAG2120.4240763337400732No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTCAGGAAAGTTGGAA2100.4200756136104499No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTTCGTGCCATACCAA2060.4120741733512032No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1910.3820687723790282No Hit
CATAGATGTTGTTGTTCTGTTCCCCAATATGAACAGAAAGAAGCTCTATG1780.35606409153647656No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCGAAAAACACCCTCTATGTGT1780.35606409153647656No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTGTGTGGCCAACAGGAAGGTCTA1640.3280590506291133No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAAATTCTCTTGACA1520.3040547298513733No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA1490.29805364965693826No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGAAAGTTGGAACCTATCAGTGTC1440.2880518493328799No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCATAGTGCCATACCAAGAATAAGA1440.2880518493328799No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTGAGGTTTCCTGGGC1330.2660478886199516No Hit
CATAGAGATCTTCTCGGCTTAGCGGCACACTGAAACATTTTCTGGTCAGC1320.2640475285551399No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA1280.25604608829589326No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA1230.24604428797183492No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTTGTGACACCGAAAA1180.2360424876477766No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA1180.2360424876477766No Hit
CATAGAAAGGGACAAGGGCTCACTCTCTGCTGCTCACTCTTTGGGTTCTA1180.2360424876477766No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA1170.23404212758296492No Hit
CATAGATCTCAAACAGCCTCTCCCAGGGTGGCCCCCAGCTGTGGCCAACA1170.23404212758296492No Hit
CATAGATCTCAAACAGCCTCTCCCAGGGTAATTCTGGCCTTGTTCTATGT1110.22203996719409497No Hit
CATAGATGAAAGAGCATTGGTTGTGACACCGAAAAACACCCTCTATGTGT1040.20803744674041327No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGCTGCTGCTCACTCTTTGGG980.19603528635154327No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTGCTGCTCACTCTTTG940.18803384609229662No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA940.18803384609229662No Hit
CATAGAGAAACTTTTAATAATGAAATACTGGGGGTAGAGAAGCTTTGAGA930.18603348602748496No Hit
CGTAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA920.1840331259626733No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGCCCGCGCAGAGCCTTCAGGTCA890.17803204576823828No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGAAGCTTTGAGAT870.17403132563861495No Hit
CATAGAGGTGAGCGGCTGTCCCCACAAGTCCGCGCAGAGCCTTCAGGTCA850.1700306055089916No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGTGCAGAGCCTTCAGGTCA830.16602988537936827No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA830.16602988537936827No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAAGGGACCAAAAGCACAAG830.16602988537936827No Hit
CATAGAGCCATCATCATTTCTCACCCAGGGTAATTCTGGCCTTGTTCTAT810.16202916524974495No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCCCGCAGAGCCTTCAGGTCA790.15802844512012162No Hit
CATAGAGGTGAGCGGCTGTCTCCAGGGTAATTCTGGCCTTGTTCTATGTG780.15602808505530996No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAACCTGTGTATATT770.15402772499049827No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGGTAATTCTGGCCTTGTTCTATG750.15002700486087495No Hit
CATAGAGGTGAGCGGCTGTCTCCAGTGTAGTATGCAGTCTGTGAGCTGTC740.14802664479606328No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGCGCCTTCAGGTCA710.1420255646016283No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACCTGC710.1420255646016283No Hit
CATAGAGATCTTCTCGGCTTAGCGGCTGTCTCCACAAGTCCGCGCAGAGC670.13402412434238162No Hit
CATAGATCCAGCTTCATCCATGTCCCTATAGATCCTCTTCTTCCTCCTCC650.1300234042127583No Hit
CATAGACACAACGTTTGAGACTGCCTGCTGCTCACTCTTTGGGTTCTATG640.12802304414794663No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACTGCT630.12602268408313497No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGACCGCGCAGAGCCTTCAGGTCA620.1240223240183233No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAAATTCTCTTGAC610.12202196395351163No Hit
CATAGGGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA610.12202196395351163No Hit
CATAGAGGTGAGCGGCTGCCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA580.11602088375907663No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA570.11402052369426498No Hit
CATAGATCCAGCTTCATCCATGTCCCAGTGTAGTATGCAGTCTGTGAGCT560.1120201636294533No Hit
CATAGAAAGGGACAAGGGCGCACTCTAGCCTGGGAGACATCTATGTGTAG520.10401872337020664No Hit
CATAGATCTAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT500.1000180032405833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)