FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12351
Sequences flagged as poor quality0
Sequence length150
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG11419.238118370982107No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA10798.736134725933123No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA7606.15334790705206No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT6034.882195773621569No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA4733.8296494210995062No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT4473.619140150595093No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA4083.303376244838475No Hit
CATAGAGGTGAGCGGCTGTCTCCAAACTGGACAATGAGAGGATCTATGTG3482.8175856205975225No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT2832.291312444336491No Hit
CATAGAGGTGAGCGGCTGTCTCCATGGCCATGCTGAAGTCCCATGATCTA2391.9350659865597926No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATGGAAGTACAC2071.675977653631285No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG1701.3764067686826977No Hit
CATAGACTTCCTTGCCCCCATTTATTGAGACTTGGTCTCATAGAATAGCC1661.3440207270666342No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGCCAC1631.3197311958545868No Hit
CATAGAATCCTTTCCCCATTGCTTGTCAGTGGCCATGCTGAAGTCCCATG1401.1335114565622215No Hit
CATAGACTGCCTCAGCCTCCTGAGTATGTGTAGAACCATGTCGTCAGTGT1281.0363533317140312No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTGG1150.931098696461825No Hit
CATAGAGGTGAGCGGCTGTCTCCAGCTTCCACATGATGGACATCTATGTG1130.9149056756537932No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTACTGGGGACTGTGACTCTG1110.8987126548457615No Hit
CATAGAAGTTCTGATCCACATTCACGTATACATCACTTATACGCCTCCCT1110.8987126548457615No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGAACCATGTCGTCAGTTAAGGC1100.8906161444417457No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCAGTGTCATCACTTATACG1080.8744231236337139No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG1060.8582301028256821No Hit
CATAGATGAAAAGTCAAGCCAGCACATGGTAAAATTAGCCAGGCATGGTG1040.8420370820176505No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATGCCATGCTGAAGTCCCATGATC880.7124929155533964No Hit
CATAGAGGTGAGCGGCTGTCTCCAACTTTGCCCCAAAAGAGGTTCTATGT850.6882033843413489No Hit
CATAGAAGTTCTGATCCACATTCACGTATTTCTGATCCACATTCACGTAT800.6477208323212695No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGGAAGT730.5910452594931584No Hit
CATAGACCAGACTTTTGAAAGAAGCACATACGGGAGCAGGAATTAGACTC690.5586592178770949No Hit
CATAGAGGTGAGCGGCTGTCTCCATGATCTATGTGTAGAGCCATGCTGAA650.5262731762610315No Hit
CATAGAATCCTTTCCCCATTGCTTGTATGGTTCTACACATAGACCAACTC650.5262731762610315No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGAGACTTGGTCTCATAGAATAGCC600.48579062424095215No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA560.45340458262488864No Hit
CATAGAGGTGAGCGGCTGTCTCCATCTATGAGACCAACTCAGATGGGATC550.4453080722208729No Hit
CATAGAGTTCAAATGGCCAATCAGGTCTTGGTCTCATAGACTTCAAATGG510.41292203060480936No Hit
CATAGAAGCAGGATGAAAACATGGTACAGTGTGGAAGTACACAAAAAGGG500.40482552020079343No Hit
CATAGAGGTGAGCGGCTGTCTCCAGGCCCAGAAGAGGGTTGGGAATGGAT500.40482552020079343No Hit
CATAGACCATCCAGAGGTAATTCTGCTCGACATGGAAGTACACAAAAAGG470.38053598898874585No Hit
CATAGAGGTGAGCGGCTGTCTCCACACTGACGCCATGCTGAAGTCCCATG470.38053598898874585No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT460.37243947858473No Hit
CATAGACATGCTAACATTACTGGGGACTGTGACTCTGTTTTCTATGTGTA460.37243947858473No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAGGTAGAGCAGGAATTAGACTC450.3643429681807141No Hit
CATAGACCATCCAGAGGTAATTCTGCTACCGTACCCTAAAGCCCTTGTGA400.32386041616063477No Hit
CATAGAGGTGAGCGGCTGTCTCCACTCACCCTGCTTATCAAACATCTCTA400.32386041616063477No Hit
CATAGAGGCGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA380.307667395352603No Hit
CATAGAATAGCCAGCAGAAGGAAGCATACGTAGCAGAGACTTGGTCTCAT380.307667395352603No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG360.2914743745445713No Hit
CATAGATGCATCAGCAACTCACAGATTGCATAGCCATGCTGAAGTCCCAT350.2833778641405554No Hit
CATAGAGGTGAGCGGCTGTCTCCATCACTTATACGCCTCCCTGTCTATGT350.2833778641405554No Hit
CATAGACCCTGGATTAGCATGAGGAAGCCAGCTCTATGTGTAGAACCATG340.27528135373653956No Hit
CATAGAATCCTTTCCCCATTGCTTGTTGTCTGTGACAGCTTGTATACATC300.24289531212047608No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT290.23479880171646017No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA290.23479880171646017No Hit
CATAGACCATCCAGAGGTAATTCTGCTACCGTAGCCATGCTGAAGTCCCA280.22670229131244432No Hit
CATAAATTCAACAGGCTTTCATCTATGTGTAGAACCATGTCGTCAGTGTA270.21860578090842847No Hit
CATAGAGGTGAGCGGCTGTCTCCACACTGGACAATGAGAGGATCTATGTG260.21050927050441262No Hit
CATAGAAAGAGACAGAAGAGAAGGTCATTTACAAATCTATGTGTAGAACC250.20241276010039672No Hit
CATAGAGGTGAGCGGCTGTCTCCATCTATGAGACGCCATGCTGAAGTCCC250.20241276010039672No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT240.19431624969638087No Hit
CATAGACCATCCAGAGGTAATTCTGCTACTCACCCTGCTTATCAAACATC230.186219739292365No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAGACTTGGTCTCATAGAGCAGG210.17002671848433326No Hit
CATAGATGACTTGGGGGAAAATGGTACACTGAACATAGCCTTTGGGGTTT200.16193020808031738No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATTCTATGAGACCAACTCAGATGG200.16193020808031738No Hit
CATAGAGGCGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA200.16193020808031738No Hit
CATAGAATAGCCAGCAGAAGGAAGCACACAAAAAGGGCATCTATGTGTAG200.16193020808031738No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGAACCATGTCGTCAGTGTAGAT190.1538336976763015No Hit
CATAGACCAGACTTTTGAAAGCAGCACACAAAAAGGGCATCTATGTGTAG190.1538336976763015No Hit
CATAGAGTTCAAATGGCCAATCAGGTTACGGTAGCAGAGACTTCGTCTCA180.14573718727228566No Hit
CATAGAATCCTTTCCCCATTGCTTGGAAGTTAGGAAGCCAGCTCTATGTG180.14573718727228566No Hit
CATAGACCCTTACCAATAACACAATCAACACCCTGCTTATCATCACCCTG170.13764067686826978No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCACCTATGTGTAG170.13764067686826978No Hit
CATAGAGGCGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT170.13764067686826978No Hit
CATAGATTGAGCTTAAATGATCTGTGCAAGACTAGGCAATTTACAAATCT160.1295441664642539No Hit
CATAGAGGTGAGCGGCTGTCTCCAACCCCTTAAGAAAATTTAATTGTCTA160.1295441664642539No Hit
CATAGAGGTGAGCGGCTGTCTCCATGTCGTCAGTGTGCCATGCTGAAGTC160.1295441664642539No Hit
CATAGAGTTCAAATGGCCAATCAGGTGAGACTTGGTCTCATAAATTCAAC160.1295441664642539No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAGGGCATCTATGTGTAGA150.12144765606023804No Hit
CATAGACATGCTAACATTTCTGGGGATAAACATTACTGGGGACTGTGACT150.12144765606023804No Hit
CATAGACATGCTAACATTTCTGGGGATAGACCAACTCAGATGGGATCCTC140.11335114565622216No Hit
CATAGATGAAAAGTCAAGCCAGCACATGGAAGTACACAAAAAGGGCATCT140.11335114565622216No Hit
CATAGAATCCTTTCCCCATTGCTTGCCATGCTGAAGTCCCATGATCTATG130.10525463525220631No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT130.10525463525220631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)