FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44834
Sequences flagged as poor quality0
Sequence length150
%GC47

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1752839.09532943748049No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT20364.541196413436231No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACATCTATGTGTAG16023.57318106793951No Hit
CATAGAACAATCAGGCACCCACCATGCTGAAGTCCCATGATCTATGTGTA7311.6304590266315742No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACCATG7071.5769282241156264No Hit
CATAGAACCAACCCTGATTCTGCTGCTCACTCTTTGGGTTCTATGTGTAG6721.498862470446536No Hit
CATAGAGCCATCATCATTTCTCACCCAGGGTAATTCTGGCCTTGTTCTAT5771.2869697104875764No Hit
CATAGATCTCAAACAGCCTCTCCCAGGGTAATTCTGGCCTTGTTCTATGT5391.2022126065039926No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCTCTATGTGTAGAACCATGTCGTC5091.1352991033590578No Hit
CATAGATCTCAAACAGCCTCTCCCAGGAAAGTTGGAACCTATCAGTGTCT4801.0706160503189543No Hit
CATAGAGGCGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA4601.0260070482223314No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAATTCTCTATGTG4591.0237765981175002No Hit
CATAGATGTTGTTGTTCTGTTGCCCAATATGAACAGAAAGAAGCTCTATG3690.8230360886826962No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCGAAAAACACCCTCTATGTGT3240.7226658339652942No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGAAAGTTGGAACCTATCAGTGTC3190.7115135834411385No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTGAGGTTTCCTGGGC2610.5821474773609314No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTCTCATAGAGGCAAGGGTAC2580.575456127046438No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCGTGCTCTTGGC2470.5509211758932953No Hit
CATAGATGTTGTTGTTCTGTTCCCCAATATGAACAGAAAGAAGCTCTATG2430.5419993754739706No Hit
CATAGATGAAAGAGCATTGGTTGTGACACCGAAAAACACCCTCTATGTGT2390.533077575054646No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTGTGTGGCCAACAGGAAGGTCTA2320.517464424320828No Hit
CATAGAAAGGGACAAGGGCTCACTCTGCTGCTCACTCTTTGGGTTCTATG2300.5130035241111657No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTTACGGTAGCAGGAAAGTTG2200.49069902306285407No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTCTATGTGTAGAACCATGTCGTC2120.4728554222242049No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAAATTCTCTTGACA2090.46616407190971143No Hit
CATAGAGCCATCATCATTTCTCACCCAGGAAAGTTGGAACCTATCAGTGT1860.41486371949859485No Hit
CATAGATCTCAAACAGCCTCTCCCAGAAGCTTTGAGATTTGTGTCTGTTC1730.38586786813578977No Hit
CATAGATGTTGTTGTTCTGTTGCCCATGTCGTCAGTGTACATTTATCGGG1620.3613329169826471No Hit
CATAGAGATCTTCTCGGCTTAGCGGCCATTGTCGCCTTCTCTTCTCTATG1520.3390284159343356No Hit
CATAGATAGCAGCAATCTCAGGCCTGGGAGACCCCATATCTACCAAAGAT1410.31449346478119283No Hit
CATAGATCTCAAACAGCCTCTCCCAGTGTGAGGTTTCCTGGGCATCAAGT1280.28549761341838786No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1180.2631931123700763No Hit
CATAGATAGCAGCAATCTCAGGCCTCGTTCTCAGGAAAGTTGGAACCTAT1140.25427131195075164No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGTATGCAGTCTGT1100.24534951153142703No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA1050.23419726100727128No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAAATTCTCTTGAC1020.2275059106927778No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACCAAAAGCACAAG1020.2275059106927778No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA1010.22527546058794665No Hit
CATAGATCCCTGGCAAGAATTCCTCTTCTTCCTCCTCCTGTCTATGTGTA980.21858411027345317No Hit
CATAGATCAAGGTGTGAGCATGGTCCTCCGATGCTTATTACATTGTTCTA980.21858411027345317No Hit
CATAGAAAGGGACAAGGGCTCACTCTCTGCTGCTCACTCTTTGGGTTCTA970.216353660168622No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCCATAGAAGCTTTGAGATTTGTGT920.20520140964446626No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA880.19627960922514162No Hit
CATAGATTTCTGTACCTCACTGCCGAGGTTTCCTGGGCATCAAGTCTATG860.19181870901547932No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA850.18958825891064818No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACTATGGCTTAATG800.1784360083864924No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAGTGTCAGGAAAGTTGGAACC780.17397510817683007No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTGCTGCTCACTCTTTG770.17174465807199893No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTGTAGCAGGAAAGTTGGAACCTA770.17174465807199893No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA740.16505330775750546No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA730.1628228576526743No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAATGCAGTGGTGCAATCTCAGC710.158361957443012No Hit
CATAGAACAATCAGGCACCCACCATGTCAGGTAAACAAACTTCTGGCCCT710.158361957443012No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAGGTTTCCTGGGCATCAAGTC690.15390105723334968No Hit
CATAGATGTTGTTGTTCTGTTGCCCACTCTTTGGGTTCTATGTGTAGAAC650.14497925681402507No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA640.14274880670919393No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA620.1382879064995316No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGGTAATTCTGGCCTTGTTCTATG620.1382879064995316No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGTGTAGAAGCTTTGAGATTTGTGT600.1338270062898693No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTCCTCTTCTTCCTCC600.1338270062898693No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGC600.1338270062898693No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTGTGCAAAATTCTCT590.13159655618503815No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTCAGGAAAGTTGGAA580.129366106080207No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTGCCATACCAAGAATAAGAA570.12713565597537582No Hit
CATAGAGGTGAGCGGCTGTCTCCAACGTTGTGTCGTGCCATACCAAGAAT560.12490520587054468No Hit
CATAGAGGTGAGCGGCTGTCCCCACAAGTCCGCGCAGAGCCTTCAGGTCA550.12267475576571352No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTGACTTGGTCTCATAGATCA550.12267475576571352No Hit
CATAGAGGTGAGCGGCTGTCTCCATGTCGTCAGTGTAGTATGCAGTCTGT540.12044430566088236No Hit
CATAGATCTAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT540.12044430566088236No Hit
CATAGACGGGAAGAGTAAGACCACCCGGGTTAGAGTCCTGGCTCTGGCAA530.11821385555605123No Hit
CATAGACGGGAAGAGTAAGACCACCCCAGCTCCACAGGGACAGAGGCTCT530.11821385555605123No Hit
CATAGATCCAGCTTCATCCATGTCCCTGAAAAGAACACGAATGAGGAAGA510.1137529553463889No Hit
CATAGAAAGGGACAAGGGCGCACTCTAGCCTGGGAGACATCTATGTGTAG510.1137529553463889No Hit
CATAGATCCAGCTTCATCCATGTCCCTGCAAAGGACATGAACTCATTCTT500.11152250524155774No Hit
CATAGACAAGCCTGCCAAGACCTCTCCTGCCCCAAGGGGCCCTTCAGCGG490.10929205513672659No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGAGGCAAGGGTAC480.10706160503189545No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCTGCGCAGAGCCTTCAGGTCA470.10483115492706428No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGGCCATTGTCGCCTTC450.10037025471740196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)