FastQCFastQC Report
Wed 8 May 2024
EGAF00005806643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102785
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3285031.959916330203825No Hit
CATAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC58155.657440287979763No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAACAA27342.659921194726857No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTT25832.513012599114657No Hit
CNTAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG22022.1423359439606946No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT19371.8845162231843169No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACACTCA17631.7152308216179402No Hit
CATAGACACCATGCCTGGCTAATTTTTTGCGTTTTTAGTAGAGATGGGGT17391.6918811110570606No Hit
CATAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA15611.5187040910638712No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAATCA14821.4418446271343095No Hit
CATAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA14531.4136303935399135No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGTGGTGTGGTG12361.2025100938852946No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG11211.0906260641144134No Hit
CATAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT7560.7355158826677044No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGCACAGATCATTTAAGCTCAA6960.6771416062655057No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTGGTGCACATGCC5470.5321788198667121No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTTGTAGAGACAGAGTT5040.49034392177846964No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT4960.48256068492484305No Hit
CATAGACACCATGCCTGGCTAATTTTTTGTATTAATCCCAGCTACTCAGG4930.47964197110473317No Hit
CATAGACACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGT4800.4669942112175901No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA4730.4601838789706669No Hit
CATAGAAACCCCAAAGGCTATGTTCAAAATGGTCAAACAGGAGGTCTATG4640.4514277375103371No Hit
CATAGAAACCCCAAAGGCTATGTTCAGTGTCTGACTGATACAGGAAGGCC4530.4407257868366007No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTGAACCTGTCTCTACT3850.3745682735807754No Hit
CATAGACAGGGAGGCGTATAAGTGATGACACTGACTGATACAGGAAGGCC3770.3667850367271489No Hit
CATAGACACCATGCCTGGCTAATTTTAAAATTAGTACCTATAATCTCAGC3370.32786885245901637No Hit
CATAGAGCCAAGGAAAGTTGAATGGAGACAGCCGCTCACCTCTATGAGAC3050.2967359050445104No Hit
CATAGATCCCATCCAATAATAATGAGCAGAATTACCTCTGGATGGTCTAT2840.2763049083037408No Hit
CATAGACAGAAACCACCCAGACAACCACACTGACTGATACAGGAAGGCCT2730.26560295763000435No Hit
CATAGACACCATGCCTGGCTAATTTTTTTGTGTTTTTGGTAGAGATGGGG2720.26463005302330106No Hit
CNTAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC2530.24614486549593811No Hit
CATAGATTTGTAAATTGCCTAGTCTTGCATCGTACACAAAGTCACGAAAG2320.22571386875516855No Hit
CATAGAGATGTTTGATAAGCAGGGTGAGCGGCTATCCCCAGAAATGTTAG2310.22474096414846523No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGCGTATTCTAAATATACAATCA2290.2227951549350586No Hit
CATAGATTCTGAAGAAATCAGATAGAGAGAAACCTGATTGGCCATTTGAA2290.2227951549350586No Hit
CATAGACACCATGCCTGGCTAATTTTTAAATATTTTGTAGAGACCGGGTT2290.2227951549350586No Hit
CATAGAGCTGGCTTCCTAACTTCCAACATGCTTCCTTCTGCTGGCTATTC2130.2072286812278056No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTGAAACCCCATCTCTA2090.20333706280099237No Hit
CATAGATGTATACAAGCTGTCACAGACAACAACACTGACTGATACAGGAA2060.20041834898088243No Hit
CATAGACCTTTGGGTTCATATCATCTGGTGAGCGGCTATCCCCAGAAATG2020.1965267305540692No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG2020.1965267305540692No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG2000.19458092134066254No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTATCCCCAGAAATGTTA1990.19360801673395925No Hit
CATAGATGCCCTTTTTGTGTACTTCCAGATGCATCAGCAACTCACAAAGT1790.17414992459989298No Hit
CATAGATGCCCTTTTTGTGTACTTCCATGCCCTTTTTGTGTGCTTCTTTC1780.17317701999318966No Hit
CATAGACCTTTGGGTTCATATCATCTGGCTACACATGGCTATGCAATCTA1770.17220411538648633No Hit
CATAGAGGATCCCATCTGAGTTGGTCAAAGTCTGTGAGTAAAGTGCTAAT1720.16733959235296977No Hit
CATAGAAACCCCAAAGGCTATGTTCAGTGTACCATTTTCCCCCAAGTCAT1670.1624750693194532No Hit
CATAGATGCCCTTTTTGTGTACTTCCACTGACGACATGGTTCTACACATA1630.15858345089263998No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG1560.1517731186457168No Hit
CATAGATGTCCATCATGTGGAAGCTGGAGACAGCCGCTCACCTCTATGAG1540.14982730943231018No Hit
CATAGACACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTT1540.14982730943231018No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTTCCTTCTGCTGGCTATTCTATG1540.14982730943231018No Hit
CATAGAACTTCACAAGGGCTTTAGGGCTACACATGGCTATGCAATCTATG1520.14788150021890353No Hit
CATAGATCCCATCCAATAATAATGAGCAATGGGCAAGCAATGACAGTCTA1510.14690859561220024No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1450.14107116797198035No Hit
CATAGATCCTCTCATTGTCCAGTTTGGTACGGTTGCACAGATCATTTAAG1450.14107116797198035No Hit
CATAGACAGGGAGGCGTATAAGTGATGACACTGACGACATGGTTCTACAC1440.14009826336527703No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1430.13912535875857374No Hit
CNTAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAACAA1420.1381524541518704No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCCGATTTGGACCTGCG1370.13328793111835385No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1360.13231502651165053No Hit
CNTAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTT1340.1303692172982439No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGCTTTGGACCTGCG1310.12745050347813397No Hit
CATAGATCCCATCCAATAATAATGAACAAGCAATGGGGAAAGGATTCTAT1300.12647759887143065No Hit
CATAGACACCATGCCTGGCTAATTTTACACTGACTGATACAGGAAGGCCT1300.12647759887143065No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTCTCTAAATATACACTCA1290.12550469426472735No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTATCCCCAGAAATGTTAGCATGT1280.12453178965802403No Hit
CATAGATCATGGGACTTCAGCATGGTGGTGTTTGCAGATTTGGACCTGCG1220.11869436201780414No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTT1220.11869436201780414No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGCCCTGCG1210.11772145741110085No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1200.11674855280439753No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTGTTATTCAAAGGTTTTCTGC1190.1157756481976942No Hit
CATAGACACCATGCCTGGCTAATTTTTAAAAAGTAGCTGGGCATGGTGGC1190.1157756481976942No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTGAAACCCCGTCTCTA1190.1157756481976942No Hit
CATAGATCCTCTCATTGTCCAGTTTGGAGACAGCCGCTCACCTCTATGAG1170.11382983898428758No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1160.11285693437758428No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG1100.1070195067373644No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTCTCTGCTACCGTAC1070.10410079291725448No Hit
CATAGATCCCATCCAATAATAATGAGCACACTGATCTATCCAGGAATTTT1060.10312788831055116No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)