FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146507
Sequences flagged as poor quality0
Sequence length150
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT1507410.28892817408042No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG81645.572429986280519No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG67624.615479123864389No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG59754.078303425774878No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA59724.076255742046455No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG50333.4353307350502025No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC45333.094050113646447No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA38872.653115550792795No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT33312.273611499791819No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG29121.987618339055472No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA26251.7917232623697161No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT26091.780802282484796No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA24141.6477028401373315No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC21151.4436170285378855No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC20241.381503955442402No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC15461.055239681380412No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG15231.039540772795839No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT14070.9603636686301679No Hit
CATAGACCCTCTCTTACCCTTCCACCAACATGCTTTTAGTCACGTCTATG13260.9050762079627594No Hit
CATAGATGGTATTTGAGTGGGGAAACAGGCCCTTCAGCATCATTTCTATG13180.8996157180202994No Hit
CATAGACCCCATGACTCAGCTCCTCAATCCTGTGTTCATGGCTTCTATGT13130.8962029118062619No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT12540.8559317984806186No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT10740.7330707747752667No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT10260.7003078351205062No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT10200.6962124676636612No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACGAATGAGGAAACAGGCACTC9990.6818786815647033No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT9270.6327342720825626No Hit
CATAGAGCTAATAAAGACATACCTGAGCCAGTGTAGCCCGTTCTCTCTGT8640.5897329137856894No Hit
CATAGATCTCCTCTCTGTAATGCACCAGTGTACCAACATGCTTTTAGTCA8280.565160709044619No Hit
CATAGAACATTGATTCCTGGCATGTCCCTTCCTTTCAATAGCCTTTTAGG7640.5214767895049383No Hit
CATAGAAGTCTCGCTCTGTCATGCAACAACAACAAAACTCGTGACTTCTA7460.5091906871344031No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC7010.4784754312080652No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGTGCTCGTATCTTGG6900.47096725753718255No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTACCCTGGGAGAAGAAA6830.46618932883752995No Hit
CATAGAGCAACAATGAAGGTGCATAAAAACTGTCGGAGGTCTATGTGTAG6580.44912529776734217No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTGGGTCCTAAATGTCTT6480.4422996853392671No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACCCTGGGAGAAGAAAT6290.42933102172592436No Hit
CATAGATCTAGCCCATCACTTCAGCATACGGTAGCAGGCCCTTCAGCATC6200.4231879705406567No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTAGCCCGTTCTCTCTGT6200.4231879705406567No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACAGTTGTGGAAAGTGC6090.41567979686977413No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGAGCATGCCTTTGAT6090.41567979686977413No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG5850.3992983270423939No Hit
CATAGATCTCCTCTCTGTAATGCACCAGTGTAACAACAACAAAACTCGTG5480.37404356105851594No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT5410.3692656323588634No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTATGATGGGAGTGTCTG5140.35083647880306057No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGTGTAGAACCATG5100.3481062338318306No Hit
CATAGATCTCCTCTCTGTAATGCACCAGGGTCCTAAATGTCTTTGTCCTT4980.33991549891814044No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG4900.33445500897568037No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG4590.3132956104486475No Hit
CATAGATTCCTCCAAAGACTGCAGGGTCCTAAATGTCTTTGTCCTTCTAT4530.30920024299180243No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG4410.30100950807811233No Hit
CATAGAACACGAAGATTTCAGATTAGCCTACACTGACCAACATGCTTTTA4380.29896182434968976No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT4310.2941838956500372No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCAGGCCCTTCAGCATCATTTCT4290.2928187731644222No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTACACTGTCAGACCCAGGCTACAC4250.2900885281931921No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTCCTTCCTTTCAATAGC4200.2866757219791546No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACACTGTCATTGTGGGTTTTAAC4160.28394547700792455No Hit
CATAGACCCCATGACTCAGCTCCTCACTCTCCCACCATTCAGACTCTATG3950.2696116909089668No Hit
CATAGACCCCATGACTCAGCTCCTCACACTGACCAACATGCTTTTAGTCA3930.26824656842335176No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTGTGCCATGCTGAAGTCCCATGAT3900.26619888469492925No Hit
CATAGACCAGTTACCACAAGAAGCAATGTCGTCAGTGTATGAGCATGCCT3830.26142095599527665No Hit
CATAGACCCCATGACTCAGCTCCTCAGTGTGTAAAGGCTGGGGTCTTGGG3790.2586907110240466No Hit
CATAGACCAGTACGCCTTACCCCTTGTTACAAAAATTGGGAAGCGGTCTA3750.2559604660528166No Hit
CATAGATTCAGAGAAGGACAGCGTGGTGCTGGAATAGTTGGACTCTATGT3660.249817414867549No Hit
CATAGATTCAGTTTACTTAGAGGCAGACATGCCTGGCCAACTGTTTTTTC3620.24708716989631893No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACCAAGGTGCATAAAAACTGTCG3490.2382138737398213No Hit
CATAGATTCTTTCCTGGCTGTGGGTGTATGCTTTATTCTCACGTGGATCT3240.22114984266963356No Hit
CATAGAATCTGGTTCAAGCACACAGTCGTCAGTGTACAGTTGTGGAAAGT3230.22046728142682603No Hit
CATAGATGGCAAATGGTGGGATCTCTATGACGAATGAGGAAACAGGCACT3230.22046728142682603No Hit
CATAGAACATTGATTCCTGGCATGTCCCATGATTTACCATCACAAATTTT3200.21841959769840347No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTGCATAAAAACTGTCGGAG3160.21568935272717346No Hit
CATAGAAGCATCCAGGTTTCTCATTTGTATGCTTTATTCTCACGTGGATC3030.2068160565706758No Hit
CATAGACCAGTACGCCTTACCCCTTGTTCTACACATAGATGTGTAGCCTG2970.20272068911383073No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGTGGGTTGAGGGAGTCTTCTCTATG2820.19248227047171806No Hit
CATAGATCTAGCCCATCACTTCAGCATCATGACTGTTAATATAGAAGAGA2720.18565665804364295No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTGCAGGCCCTTCAGCATCAT2660.1815612905867979No Hit
CATAGATGACATGGGAAATTATGCTGCTACACTGTCATTGTGGGTTTTAA2620.17883104561556784No Hit
CATAGATTCTTTCCTGGCTGTGGGTGCATAAAAACTGTCGGAGGTCTATG2590.17678336188714533No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA2590.17678336188714533No Hit
CATAGATCTAGCCCATCACTTCAGCATCGCAGGCCCTTCAGCATCATTTC2460.16791006573064768No Hit
CATAGATTCAGAGAAGGACAGCGTGGTACGGTAGCAGGCCCTTCAGCATC2450.16722750448784018No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTTGTTACAAAAATTGGGA2440.16654494324503266No Hit
CATAGACCAGTTACCACAAGAAGCAATGAGACAGTTGTGGAAAGTGCAAT2340.15971933081695755No Hit
CATAGAGCAACCCCAGCAGTCTGAGAAAAGATGCAGTACAGCTCTATGTG2320.15835420833134253No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGCAGGCCCTTCAGC2290.15630652460292No Hit
CATAGATCTAGCCCATCACTTCAGCAGGTGGGTTGAGGGAGTCTTCTCTA2270.15494140211730498No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCAACATGCTTTTAGTCAC2030.13855993228992472No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCACTGACGAATGAGGAAACAGG2030.13855993228992472No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGCAGCCCGTTCTCTCTGTTGTGT2000.13651224856150218No Hit
CATAGATCTAGCCCATCACTTCAGCAACACTGACGACATGATGGGAGTGT1970.13446456483307964No Hit
CATAGATCTAGCCCATCACTTCAGCACACTGACGACAGTTGTGGAAAGTG1920.13105175861904209No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGGGTCATTGTGAGGA1910.13036919737623456No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTGTGGTGGGTTGAGGGAGTCTTCT1810.12354358494815947No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGTCGTCAGTGTAGCC1760.12013077873412191No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTTGGAGGCTGGAGAAAAA1740.11876565624850689No Hit
CATAGAAGCATCCAGGTTTCTCATTTGTCAGACCCAGGCTACACATCTAT1740.11876565624850689No Hit
CATAGACCAGTACGCCTTACCCCTTGGTCTCATAGACCAGTACGCCTTAC1730.11808309500569938No Hit
CATAGACCAGTTACCACAAGAAGCAATGATAGACCATGGAGAGAATAATC1720.11740053376289189No Hit
CATAGACCCTCTCTTACCCTTCCACCATTCAGACTCTATGTGCTCGTATC1680.11467028879166184No Hit
CATAGACCAGTACGCCTTACCCCTTGTACACTGACGAATGAGGAAACAGG1660.1133051663060468No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCAGGCCCTTCAGCATCAT1660.1133051663060468No Hit
CATAGATCTCCTCTCTGTAATGCACCAACATGCTTTTAGTCACGTCTATG1640.1119400438204318No Hit
CATAGATTCCTCCAAAGACTGCAGGCCCTTCAGCATCATTTCTATGTGTA1630.11125748257762429No Hit
CATAGATGGGACAGCGACAATGACAGACCCAGGCTACACATCTATGTGTA1600.10920979884920173No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTGTACCAACATGCTTTTAGTCACG1490.10170162517831913No Hit
CATAGATCTAGCCCATCACTTCAGCACTCTCCCACCATTCAGACTCTATG1480.10101906393551162No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCACACTGACGAATGAGGA1480.10101906393551162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)