FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences198500
Sequences flagged as poor quality0
Sequence length150
%GC33

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT196569.902267002518892No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG143497.228715365239295No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC132166.657934508816121No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG126656.380352644836272No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG112755.680100755667506No Hit
CATAGAACATTGATTCCTGGCATGTCCCATGATTTACCATCACAAATTTT84274.245340050377834No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG80444.052392947103275No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA77783.9183879093198994No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA70623.557682619647355No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC64613.2549118387909317No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC54172.7289672544080603No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG53532.6967254408060453No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA48612.4488664987405544No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG48572.446851385390428No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT39401.9848866498740556No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT31361.5798488664987405No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT29451.4836272040302267No Hit
CATAGATGGTATTTGAGTGGGGAAACAGGCCCTTCAGCATCATTTCTATG23461.1818639798488664No Hit
CATAGAACATTGATTCCTGGCATGTCCTTCCTTTCAATAGCCTTTTAGGT22231.1198992443324938No Hit
CATAGATTCCTCCAAAGACTGCAGGGTCCTAAATGTCTTTGTCCTTCTAT21671.0916876574307306No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT16890.8508816120906801No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTTATAGAAAACAAGGAGAACA15900.801007556675063No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACGAATGAGGAAACAGGCACTC15880.8No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT10440.5259445843828715No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT10320.5198992443324937No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT10280.5178841309823679No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC10110.5093198992443325No Hit
CATAGAGCAACAATGAAGGTGCATAAAAACTGTCGGAGGTCTATGTGTAG9250.4659949622166247No Hit
CATAGACCCCATGACTCAGCTCCTCATGTCAGACCCAGGCTACACATCTA8690.4377833753148615No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT8370.4216624685138539No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT7560.3808564231738035No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA7450.3753148614609572No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTAGCCCGTTCTCTCTGTT6290.3168765743073048No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC5930.2987405541561713No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG5630.28362720403022673No Hit
CATAGATTCTTTCCTGGCTGTGGGTGCATAAAAACTGTCGGAGGTCTATG5460.27506297229219145No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACCCTGGGAGAAGAAATGTTGG4920.24785894206549117No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTGCATAAAAACTGTCGGAG4730.23828715365239295No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG4380.22065491183879093No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGTGTAGAACCATG4110.2070528967254408No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGCTGGTGTTTTCCTTGATCTATG3860.19445843828715367No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGATGGGAGTGTCTGC3820.1924433249370277No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG3810.19193954659949622No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACAGTTGTGGAAAGTGC3480.17531486146095718No Hit
CATAGACCAGTTACCACAAGAAGCAATGAGCATGCCTTTGATAAAACATC3360.16926952141057933No Hit
CATAGACCCTCTCTTACCCTTCCACCAACATGCTTTTAGTCACGTCTATG3360.16926952141057933No Hit
CATAGAGCTAATAAAGACATACCTGAGCCAACTGGCTTGATTGCACCTTT3280.16523929471032747No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGCTCGTATCTTGGCCATCTA3130.15768261964735517No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGTTACAAAAATTGGGAA3000.15113350125944583No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG2760.13904282115869018No Hit
CATAGATCTAGCCCATCACTTCAGCATCAGCAGGCCCTTCAGCATCATTT2740.1380352644836272No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGCAGGCCCTTCAGC2680.1350125944584383No Hit
CATAGATTCAGAGAAGGACAGCGTGGTGCTGGAATAGTTGGACTCTATGT2640.13299748110831233No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT2620.13198992443324936No Hit
CATAGATCTAGCCCATCACTTCAGCATCGCAGGCCCTTCAGCATCATTTC2530.127455919395466No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGAGACAGTTGTGGAAAGTGC2400.12090680100755667No Hit
CATAGATCTAGCCCATCACTTCAGCATCACTCTCCCACCATTCAGACTCT2390.12040302267002519No Hit
CATAGATCTCCTCTCTGTAATGCACCAACATGCTTTTAGTCACGTCTATG2250.11335012594458438No Hit
CATAGATGGGACAGCGACAATGACAGTGCATAAAAACTGTCGGAGGTCTA2160.10881612090680101No Hit
CATAGATCTAGCCCATCACTTCAGCATCAGGCCCTTCAGCATCATTTCTA2150.10831234256926951No Hit
CATAGATCTAGCCCATCACTTCAGCACAGGCCCTTCAGCATCATTTCTAT2100.10579345088161209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)