FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131287
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA4298032.737437827050655No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA79616.063814391371576No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC40123.0559004318782517No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG25071.909556924904979No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA24211.8440515816493637No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT17001.2948730643551913No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT16991.2941113743173354No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA15131.1524370272761204No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA14341.0922635142854968No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT14231.0838849238690809No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA12980.9886736691370813No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT11450.8721350933451142No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT7760.5910714693762521No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC6390.4867199341899807No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG6370.48519655411426876No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCAC6190.47148613343286083No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTTAGGTCA5260.4006489599122533No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCCCTTAAGAAAATTTAATTG4950.3770365687387175No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG4560.34733065726233364No Hit
CATAGAGGTGAGCGGCTGTCTCCATCTATGAGACCAACTCAGATGGGATC4410.33590530669449375No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT4100.3122929155209579No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAATTAGCCAGGCA4030.30696108525596594No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT3790.28868052434742203No Hit
CATAGAGTTCAAATGGCCAATCAGGTGGTCTTGGAAGTTAGGAAGCCAGC3780.2879188343095661No Hit
CATAGAGGTGAGCGGCTGTCTCCAAACTGGACAATGAGAGGATCTATGTG3760.28639545423385404No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCAC3740.2848720741581421No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT3610.27497010366601415No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGTGCCAC3460.26354475309817427No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCAC3360.2559278527196143No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGTGTGTGCCAC3280.24983433241676634No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA3250.24754926230319835No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG3150.23993236192463838No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG3150.23993236192463838No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA3080.23460053165964642No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA3020.23003039143251044No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCAC3020.23003039143251044No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA2940.2239368711296625No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCAC2920.2224134910539505No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGCCAC2910.22165180101609452No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATGTTGTCTGTGACAGCTTGTATA2840.21631997075110257No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA2610.19880109988041467No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT2550.1942309596532787No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG2310.1759503987447348No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA2290.17442701866902283No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCGCCAC2250.17138025851759886No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCTGCCAC2220.16909518840403087No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGTACCACAGGCATGTGCCAC2160.1645250481768949No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG2140.1630016681011829No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCAC2140.1630016681011829No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA2090.15919321791190294No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCATGCACCAC2090.15919321791190294No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCAC2040.15538476772262297No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA2020.15386138764691096No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTCTGCGCCAC1960.149291247419775No Hit
CATAGAGGTGAGCGGCTGTCTCCATCACTTATACGCCTCCCTGTCTATGT1900.14472110719263903No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACATGCCAC1850.14091265700335906No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAAATTAGCCAGGC1850.14091265700335906No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA1820.13862758688979107No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCACCAC1810.13786589685193507No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT1800.1371042068140791No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA1710.13024899647337512No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA1690.12872561639766314No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA1680.12796392635980716No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCACACCAC1680.12796392635980716No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCAC1620.12339378613267116No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACATGCCAC1570.11958533594339119No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG1540.11730026582982321No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCATGCCAC1450.11044505548911926No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCGCCAC1440.10968336545126327No Hit
CATAGACATGCTAACATTTCTGGGGATAACATTACTGGGGACTGTGACTC1420.10815998537555128No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG1420.10815998537555128No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCAC1420.10815998537555128No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCAC1410.10739829533769527No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA1380.1051132252241273No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGAACCACAGGCATGTGCCAC1350.1028281551105593No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATGGAAGTACAC1340.10206646507270331No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCACGCCAC1320.10054308499699133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)