FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27893
Sequences flagged as poor quality0
Sequence length150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATTGAGCTTAAATGATCTGTGCAAGGTTAAACAATATCCAAATCC340812.218119241386729No Hit
CATAGACCCTGGATTAGCATGAGGAACATGGCTTCCCATTTCAGACAAGG21057.546696303732118No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA18846.754382820062381No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA15795.660918510020435No Hit
CATAGATGGAGAGAGTGAGGGAAAGGAAATTATGGGAGCCCTGTGAAACG15165.4350553902412795No Hit
CATAGATATGCCCATGGTTAGGAAGGAAGGATCAATATTGTTAAAATGGG13294.764636288674578No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT6562.35184454881153No Hit
CATAGATGAAAAGTCAAGCCAGCACAAATATTTGGAAACTAATTCCACTG5682.036353206897788No Hit
CATAGACTGTCATTGCTTGCCCATTGGGATTTAAAAAAAGGAAAAGAACA4801.7208618649840461No Hit
CATAGAATAGCCAGCAGAAGGAAGCAACCCAAATGGACATTTCACTTATA4731.6957659627863622No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT4221.5129243896318072No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG4151.4878284874341234No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACGCCAC3571.2798910120818843No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT3481.2476248521134334No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG3391.2153586921449826No Hit
CATAGACCTCCTGTTTGACCATTTTGACTGTTATTACAAAATAATGTTAA3191.143656114437314No Hit
CATAGAAGCAGGATGAAAACATGGTACATCCTACATCAGCAAGATGTAAA3121.11856021223963No Hit
CATAGAAGTTCTGATCCACATTCACGTATGTGTATAAATTATTTTGGTGC3081.1042196966980964No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA2650.9500591546266088No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT2470.8855268346897072No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA2450.8783565769189402No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCGCCAG2380.8532606747212562No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAGGTTACTATTTTCTTGTACTA2370.8496755458358728No Hit
CATAGAGTTCAAATGGCCAATCAGGTAGCAGAAATATTTCTAATTGGGCA2350.8425052880651059No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG2280.8174093858674218No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT2140.7672175814720539No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCACC1840.6596637149105511No Hit
CATAGACCAGACTTTTGAAAGAAGCACATGTAACTTTTGGTGATAAAGTA1640.5879611372028825No Hit
CATAGATGACTTGGGGGAAAATGGTAGAAACAGCCAGTTTTCCCTTCTAT1570.5628652350051985No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGAAGTCAAATTGTCC1560.559280106119815No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC1550.5556949772344315No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA1540.5521098483490482No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG1460.5234288172659807No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGTGCACACCAC1370.4911626572975299No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT1310.4696518839852293No Hit
CATAGACCCACTTTCGTGACTTTGTGATAATTATTTAATTTTTCCACTTC1200.43021546624601154No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG1040.37285340407987666No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGCATTACAGGCGCCTGCGAC1000.35851288853834296No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG960.34417237299680925No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCAC880.3154913419137418No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGCGATTACAGGCGCCTGCCAC820.29398056860144123No Hit
CATAGAAAGAGACAGAAGAGAAGGTCATTTAAAAAGGAAACAGAGATTGG740.26529953751837376No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA720.2581292797476069No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA700.2509590219768401No Hit
CATAGACATGCTAACATTTCTGGGGATAGTTCAGAAAATTAGAGTACATT690.24737389309145663No Hit
CATAGACTGCCTCAGCCTCCTGAGTACCTGGGATTACAGGCACGCATCAC560.20076721758147206No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCTGGCCAC480.17208618649840463No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCACGCCAC480.17208618649840463No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATAATAGGTGCCCGCCAT440.1577456709568709No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATAACAGGTGCACGCCAC440.1577456709568709No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGAACCACAGGCATGTGCCAC430.15416054207148747No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAGAAGTCAAATTGTCC420.15057541318610404No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCTTGCCAC400.1434051554153372No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG400.1434051554153372No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGTGCCCACCAC390.13982002652995376No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA380.1362348976445703No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG360.12906463987380346No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA360.12906463987380346No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA340.1218943821030366No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGTGGAAGTACACAA310.11113899544688631No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTTGTA310.11113899544688631No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT280.10038360879073603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)