FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11466
Sequences flagged as poor quality0
Sequence length150
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC205517.92255363683935No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACACTCA9428.215593929879644No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG9097.927786499215071No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAATCA7616.637013779870923No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTT3052.6600383743240887No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT2782.4245595674167104No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT2772.4158381301238445No Hit
CATAGATGCCCTTTTTGTGTACTTCCATAGATGCCCTTTTTGTGTACTTC2652.311180882609454No Hit
CATAGACACCATGCCTGGCTAATTTTTTGCGTTTTTAGTAGAGATGGGGT2452.1367521367521367No Hit
CATAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA2442.128030699459271No Hit
CATAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA2382.0757020757020754No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG2241.9536019536019535No Hit
CATAGATCCCATCCAATAATAATGAACAAGCAATGGGGAAAGGATTCTAT1721.5000872143729287No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGCGAAACCCTGTCTCTA1621.4128728414442702No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA1521.3256584685156114No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGCGTATTCTAAATATACAATCA1411.2297226582940868No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGAGAC1291.1250654107796965No Hit
CATAGAGCCAAGGAAAGTTGAATGGAGACAGCCGCTCACCTCTATGAGAC1140.9942438513867086No Hit
CATAGAAACCCCAAAGGCTATGTTCAAAATGGTCAAACAGGAGGTCTATG980.8547008547008548No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTTCCTTCTGCTGGCTATTCTATG940.8198151055293913No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAGTCTATGAGACC730.636664922379208No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGTGGTGTGGTG710.6192220477934763No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGACACTGACTGATACAGGAAG550.47967905110762254No Hit
CATAGAGAGATTTTGGGCTGAGACAATAATGCCGCATATCTACAACTATC550.47967905110762254No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTGAAACCCTATCTCTA500.43607186464329317No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTACACTGACGACATGGTTCTACA480.4186289900575615No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCCGTATGTGCTTCTTTCAAAAG450.39246467817896385No Hit
CATAGACACCATGCCTGGCTAATTTTTAAATATTTTGTAGAGACCGGGTT440.383743240886098No Hit
CATAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT440.383743240886098No Hit
CATAGAGCGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC430.3750218035932322No Hit
CATAGACAGGGAGGCGTATAAGTGATGACTGATACAGGAAGGCCTTTCTA420.3663003663003663No Hit
CATAGACACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGT410.35757892900750043No Hit
CATAGATCATGGGACTTCAGCATGGCCAGCATGGTGAAACCCTGTCTCTA380.33141461712890286No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGTATCCCCAGAAATG320.27908599337170764No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGCGAAACTCCCACTAAA310.2703645560788418No Hit
CATAGATCATGGGACTTCAGCATGACGGTGTTTGCAGATTTGGACCTGCG290.25292168149311006No Hit
CATAGAGAGATTTTGGGCTGAGACAATGGGGTTTTCTAGATATACACTCA290.25292168149311006No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATGAGACCAAGTCTCTGCTA290.25292168149311006No Hit
CATAGAGCGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACACTCA280.2442002442002442No Hit
CATAGATCCCATCCAATAATAATGAGCAGAATTACCTCTGGATGGTCTAT280.2442002442002442No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGCTGATGCATCTATGAGACCA270.23547880690737832No Hit
CATAGAGAGATTTTGGGCTGAGACGATAATGCCACATATCTACAACTATC250.21803593232164659No Hit
CATAGATCCCATCCAATAATAATGAGCAACACTGACTGATACAGGAAGGC250.21803593232164659No Hit
CATAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTATAACTATC240.20931449502878074No Hit
CATAGATGCCCTTTTTGTGTACTTCCACTGACGACATGGTTCTACACATA210.18315018315018314No Hit
CATAGATGTCCATCATGTGGAAGCTGGCTATTCTATGAGACCAAGTCCTG190.16570730856445143No Hit
CATAGACCTTTGGGTTCATATCATCTGGCTACACATGGCTATGCAATCTA190.16570730856445143No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGGTTTCTAGATATACACTCA190.16570730856445143No Hit
CATAGAGAGATTTTGGGCTGAGACGATAATGCCGCATACCTACAACTATC170.1482644339787197No Hit
CATAGACAGAAACCACCCAGACAACCTCCTTTCCCTCACTCTCTCCATCT150.13082155939298795No Hit
CATAGAGCGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAATCA150.13082155939298795No Hit
CATAGATGTATACAAGCTGTCACAGACAACAAGCAATGGGGAAAGGATTC150.13082155939298795No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAGTCCAATGGGCA150.13082155939298795No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGACTTGGTTCTACACA140.1221001221001221No Hit
CATAGACAGGGAGGCGTATAAGTGATGGAGACAGCCGCTCACCTCTATGA130.11337868480725624No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG130.11337868480725624No Hit
CATAGAGAGATTTTGGGCTGAGACAATGGGGTTTTCTAGATATACAATCA130.11337868480725624No Hit
CATAGAACTTCACAAGGGCTTTAGGGCTACACATGGCTATGCAATCTATG130.11337868480725624No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTATACGTGAATGTGGATCAGAA120.10465724751439037No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAAATATACAATCA120.10465724751439037No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTACCATGTTTTCATCCTG120.10465724751439037No Hit
TAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATCTG120.10465724751439037No Hit
CATAGAGGGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC120.10465724751439037No Hit
CATAGATACCCTTTTTGTGTACTTCCATAGATGCCCTTTTTGTGTACTTC120.10465724751439037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)