FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3255
Sequences flagged as poor quality0
Sequence length150
%GC35

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATGAAAAGTCAAGCCAGCACAAAATCTCTCTATGTGTAGAACCAT2688.233486943164364No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT2467.557603686635944No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA2146.5745007680491545No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT2136.5437788018433185No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA2116.482334869431644No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA1815.560675883256529No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT1594.88479262672811No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG1173.5944700460829497No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG772.3655913978494625No Hit
CATAGAATCCTTTCCCCATTGCTTGTTGTCTGTGACAGCTTGTATACATC531.6282642089093702No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG501.5360983102918586No Hit
CATAGACATGCTAACATTTCTGGGGATAGACATGCTAACATTACTGGGGA441.3517665130568357No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTGGAAGTAC361.1059907834101383No Hit
CATAGAGGTGAGCGGCTGTCTCCAGAGACTTGGTCTCATAGAGCAGGAAT341.044546850998464No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT310.9523809523809524No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATTGGAAGTACA290.8909370199692781No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTGAGCAGGAATTAGACTCTT290.8909370199692781No Hit
CATAGAGTTCAAATGGCCAATCAGGTAAGGCTGGCAAAGTTCCAATCTAT270.8294930875576038No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA260.7987711213517665No Hit
CATAGAGCAGAAAACCTTTGAATAACAGACATAGAGCAGGAATTAGACTC250.7680491551459293No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT250.7680491551459293No Hit
CATAGAGGTGAGCGGCTGTCTCCAAACTGGACAATGAGAGGATCTATGTG250.7680491551459293No Hit
CATAGAAGTTCTGATCCACATTCACGTATACACTGAACATAGCCTTTGGG220.6758832565284179No Hit
CATAGAAAGGCCTTCCTGTATCAGTCATACGGGAGCAGGAATTAGACTCT190.5837173579109063No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGGAAGT170.522273425499232No Hit
CATAGACATGCTAACATTTCTGGGGATATTACTGGGGACTGTGACTCTGT160.4915514592933948No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATGGAAGTACAC150.4608294930875576No Hit
CATAGACCTCCTGTTTGACCATTTTGAACACATAGATTGGAACTTTGCCC150.4608294930875576No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA140.43010752688172044No Hit
CATAGATTGAGCTTAAATGATCTGTGCAAGACTAGGCAATTTACAAATCT140.43010752688172044No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA140.43010752688172044No Hit
CATAGACTGTCATTGCTTGCCCATTGTTTGGAAGTTAGGAAGCCAGCTCT130.39938556067588327No Hit
CATAGAATCCTTTCCCCATTGCTTGTAACTTTGCCCCAAAAGAGGTTCTA130.39938556067588327No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATCAACCCCTTAAGAAAATTTAAT120.3686635944700461No Hit
CATAGACATGCTAACATTACTGGGGACTGTGACTCTGTTTTCTATGTGTA120.3686635944700461No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAGAGCAGGAATTAGACTCTTGA110.3379416282642089No Hit
CATAGAATCCTTTCCCCATTGCTTGTACACATAGATTGGAACTTTGCCCC100.30721966205837176No Hit
CATAGACTGTCATTGCTTGCCCATTGGACTGTCATTGCTTGCTCATTATT100.30721966205837176No Hit
CATAGATATGCCCATGGTTAGGAAGGCTGGCAAAGTTCCAATCTATGTGT90.2764976958525346No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTCCACATGATGGACATCTA90.2764976958525346No Hit
CATAGACTGCCTCAGCCTCCTGAGTATGTGTAGAACCATGTCGTCAGTGT90.2764976958525346No Hit
CATAGACATGCTAACATTTCTGGGGATACATTACTGGGGACTGTGACTCT80.2457757296466974No Hit
CATAGACCAGACTTTTGAAAGAAGCACATGGAAGTACACAAAAAGGGCAT80.2457757296466974No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGTGGAAGTACACAA80.2457757296466974No Hit
CATAGACATGCTAACATTTCTGGGGATGCAAGACTAGGCAATTTACAAAT80.2457757296466974No Hit
CATAGAAGCAGGATGAAAACATGGTACATTACTGGGGACTGTGACTCTGT70.21505376344086022No Hit
CATAGATGAAAAGTCAAGCCAGCACAAGGGAGCAGGAATTAGACTCTTGA70.21505376344086022No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT70.21505376344086022No Hit
CATAGACCCTTACCAATAACACAATCAACACCCTGCTTATCAAACATCTC70.21505376344086022No Hit
CATAGACTGTCATTGCTTGCCCATTGTTGGAAGTTAGGAAGCCAGCTCTA70.21505376344086022No Hit
CATAGAATAGCCAGCAGAAGGAAGCACACAAAAAGGGCATCTATGTGTAG70.21505376344086022No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT70.21505376344086022No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAAGCCCTTGTGAA60.18433179723502305No Hit
CATAGACTGTCATTGCTTGCCCATTGCTGTCATTGCTTGCTCATTATTAT60.18433179723502305No Hit
CATAGAGTTCAAATGGCCAATCAGGTACTTGGTCTCATAAATTCAACAGG60.18433179723502305No Hit
CATAGATGACTTGGGGGAAAATGGTAAACCATGCAAGACTAGGCAATTTA60.18433179723502305No Hit
CATAGAGTTCAAATGGCCAATCAGGTACGGTAGCAGAGACTTCGTCTCAG60.18433179723502305No Hit
CATAGACATGCTAACATTTCTGGGGATAAACATTACTGGGGACTGTGACT50.15360983102918588No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGAGACTTCGTCTCAGCCCAAAATC50.15360983102918588No Hit
CATAGAGCAGAAAACCTTTGAATAACAGACTCATAGAGCAGGAATTAGAC50.15360983102918588No Hit
CATAGACATGCTAACATTTCTGGGGATTGTGACTCACTGGGGACTGTGAC50.15360983102918588No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG50.15360983102918588No Hit
ATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTATG50.15360983102918588No Hit
CATAAATTCAACAGGCTTTCATCTATGTGTAGAACCATGTCGTCAGTGTA50.15360983102918588No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGATCTATG50.15360983102918588No Hit
CATAGACATGCTAACATTTCTGGGGATCTGGGGACTGTGACTCTGTTTTC50.15360983102918588No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGAATTAGACTCTTGACATCTATG50.15360983102918588No Hit
CATAGAGCAGGAATTAGACTCTTGACATCTATGTGTAGAACCATGTCGTC50.15360983102918588No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTACTGGGGACTGTGACTCTG50.15360983102918588No Hit
CATAGACTGTCATTGCTTGCCCATTGTCATTGCTTGCTCATTATTATTGG40.1228878648233487No Hit
CATAGAATCCTTTCCCCATTGCTTGTCTGTGACAGCTTCCACATGATGGA40.1228878648233487No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCACCCTGCTTATCAAACAT40.1228878648233487No Hit
CATAGACATGCTAACATTTCTGGGGATAGACATGCTAACATTTCTGGGGA40.1228878648233487No Hit
CATAGAATAGCCAGCAGAAGGGAGCAGGAATTAGACTCTTGACATCTATG40.1228878648233487No Hit
CATAGACATGCTAACATTTCTGGGGATAGAGACTTGGTCTCATAGACATG40.1228878648233487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)