FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65036
Sequences flagged as poor quality0
Sequence length150
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA692910.654099268097669No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG46887.20831539455071No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA45777.037640691309428No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA34515.306291899870841No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT34225.261701211636631No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA30954.75890276154745No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT22033.3873546958607537No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT17872.747708961190725No Hit
CATAGAGGTGAGCGGCTGTCTCCAAACTGGACAATGAGAGGATCTATGTG15942.4509502429423704No Hit
CATAGACCAGACTTTTGAAAGAAGCACATGGAAGTACACAAAAAGGGCAT14292.1972446029891137No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCCAGATGATATGAACCCAA13862.131127375607356No Hit
CATAGAAAGGCCTTCCTGTATCAGTCATCACTTATACGCCTCCCTGTCTA12591.935850913340304No Hit
CATAGAATCCTTTCCCCATTGCTTGTGACTTCGTCTCAGCCCAAAATCTC12371.9020234946798695No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT11391.7513377206470262No Hit
CATAGAGGTGAGCGGCTGTCTCCATCTATGAGACCAACTCAGATGGGATC8451.2992803985484962No Hit
CATAGACTTCCTTGCCCCCATTTATTGATGAAAATTAGCCAGGCATGGTG7861.208561412140968No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTGGAAGTACACAAAAAGGGC7821.2024109723845255No Hit
CATAGACCATCCAGAGGTAATTCTGCTATAAGGCTGGCAAAGTTCCAATC7271.11784242573344No Hit
CATAGACCTCCTGTTTGACCATTTTGAATGAGAGTCCCTGTTGCTCTATG6500.9994464604219202No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACGTAGTTTCTCTCTATCTGAT6450.9917584107263668No Hit
CATAGAATCCTTTCCCCATTGCTTGTTGTCTGTGACAGCTTGTATACATC5990.9210283535272772No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG5340.8210837074850852No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT5270.8103204379113107No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAATAGAGCAGGAATTAGACTCT4990.7672673596162125No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA4610.7088381819300079No Hit
CATAGAAGTTCTGATCCACATTCACGTATACGCCTGCCATGCTGAAGTCC4340.6673227135740205No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATTCTATGAGACCAACTCAGATGG4130.635032904852697No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT3800.5842917768620457No Hit
CATAGAATCCTTTCCCCATTGCTTGTGACAGCTTCCACATGATGGACATC3700.5689156774709392No Hit
CATAGACATGCTAACATTTCTGGGGATTTACTGGGGACTGTGACTCTGTT3660.5627652377144966No Hit
CATAGATGCATCAGCAACTCACAGATTGCATAGCCATGCTGAAGTCCCAT3530.5427763085060582No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG3410.5243249892367304No Hit
CATAGAGGTGAGCGGCTGTCTCCATCACTTATACGCCTCCCTGTCTATGT3150.48434713081985364No Hit
CATAGATTGAGCTTAAATGATCTGTGCAATACGGGAGCAGGAATTAGACT3140.48280952088074297No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT2980.45820776185497264No Hit
CATAGAGGTGAGCGGCTGTCTCCATGTCGTCAGTGGCCATGCTGAAGTCC2800.430530782950981No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTCCACATGATGGACATCTA2610.4013161941078787No Hit
CATAGACTGCCTCAGCCTCCTGAGTATGTGTAGAACCATGTCGTCAGTGT2580.39670336429054676No Hit
CATAAATTCAACAGGCTTTCATCTATGTGTAGAACCATGTCGTCAGTGTA2510.38594009471677226No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA2210.3398117965434529No Hit
CATAGACCATCCAGAGGTAATTCTGCTACCGTAGCCATGCTGAAGTCCCA2170.33366135678701025No Hit
CATAGACATGCTAACATTTCTGGGGATATTACTGGGGACTGTGACTCTGT2160.33212374684789964No Hit
CATAGATTGAGCTTAAATGATCTGTGCAAGACTAGGCAATTTACAAATCT1940.29829632818746543No Hit
CATAGACCCTTACCAATAACACAATCAACACGACTCCATTCAACTTTCCT1830.2813826188572483No Hit
CATAGAGGCGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA1810.278307398979027No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGAACCATGTCGTCAGTGTACTG1380.2121901715972692No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAGGGCATCTATGTGTAGA1210.1860508026323882No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG1130.17374992311950305No Hit
CATAGAATCCTTTCCCCATTGCTTGTACACTGACGCCATGCTGAAGTCCC1130.17374992311950305No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT1090.16759948336306046No Hit
CATAGAGGCGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA1070.16452426348483917No Hit
CATAGACCATCCAGAGGTAATTCTGCTACCGTATCACCCTGCTTATCAAA1050.16144904360661788No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGCTTCCACATGATGGACATCTATG1030.1583738237283966No Hit
CATAGAGGTGAGCGGCTGTCTCCACACTGACGCCATGCTGAAGTCCCATG1010.1552986038501753No Hit
CATAGAATAGCCAGCAGAAGGAAGCACACAAAAAGGGCATCTATGTGTAG1010.1552986038501753No Hit
CATAGACCTGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT990.152223383971954No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAGTCACTGGGGACTGTGACTCT980.15068577403284333No Hit
CATAGACCATCCAGAGGTAATTCTGCTACCGTACCCTAAAGCCCTTGTGA940.14453533427640075No Hit
CATAGACCATCCAGAGGTAATTCTGCTACCGTAACTGGGGACTGTGACTC900.13838489451995817No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATAGACCATCACTTATACGCCT870.13377206470262623No Hit
CATAGACTGTCATTGCTTGCCCATTGTTGGAAGTACACAAAAAGGGCATC840.1291592348852943No Hit
CATAGACACGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT830.12762162494618365No Hit
CATAGAATCCTTTCCCCATTGCTTGTCAGCTTCCACATGATGGACATCTA830.12762162494618365No Hit
CATAGACATGCTAACATTTCTGGGGATATACTGGGGACTGTGACTCTGTT830.12762162494618365No Hit
CATAGAACGGCCTTCCTGTATCAGTCAGTGTCCAGATGATATGAACCCAA810.12454640506796236No Hit
CATAGATTGCATAGCCATGCTGAAGTCCCATGATCTATGTGTAGAACCAT810.12454640506796236No Hit
CATAGAGGTGAGCGGCTGTCTCCATGATCTATGTGTAGAACCATGTCGTC790.12147118518974108No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA690.1060950857986346No Hit
CATAGAGGTGAGCGGCTGTCTCCACACTGGACAATGAGAGGATCTATGTG690.1060950857986346No Hit
CATAGACCAGACTTTTGAAAGCAGCACACAAAAAGGGCATCTATGTGTAG660.10148225598130266No Hit
CATAGATATGCCCATGGTTAGGAAGCCATGCTGAAGTCCCATGATCTATG660.10148225598130266No Hit
CATAGATGGAGAGAGTGAGGGAAAGGGTGGTTGTCTGGGTGGTTTCTGTC660.10148225598130266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)