FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166919
Sequences flagged as poor quality0
Sequence length150
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT1720210.305597325648968No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG91075.455939707283173No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG89595.3672739472438735No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG69774.179871674285132No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG56803.402848087994776No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA54913.289619516052696No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG54373.2572684954978164No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC50963.052977791623482No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA50022.9966630521390614No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC43422.6012616898016403No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT41402.48024490920746No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT38972.3346653167105003No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA35872.14894649500656No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC32981.9758086257406289No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT28601.7134059034621583No Hit
CATAGACCCTCTCTTACCCTTCCACCAACATGCTTTTAGTCACGTCTATG26381.5804072634032076No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC24611.4743678071399902No Hit
CATAGATGGTATTTGAGTGGGGAAACAGGCCCTTCAGCATCATTTCTATG20761.243717012443161No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT19521.1694294837615848No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG18281.0951419550800088No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT16000.958548757181627No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT14080.8435229063198317No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT13210.7914018176480807No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT13020.780019051156549No Hit
CATAGACCCTCTCTTACCCTTCCACCCTGGGAGAAGAAATGTTGGTCTAT12950.7758254003438794No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT8500.5092290272527393No Hit
CATAGAGCAACAATGAAGGTGCATAAAAACTGTCGGAGGTCTATGTGTAG8320.49844535373444604No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT8040.4816707504837676No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTACCAACATGCTTTTAG7840.46968889101899725No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA7000.4193650812669618No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC6870.41157687261486114No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG6710.4019913850430448No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGATGGGAGTGTCTGC6590.3948022693641826No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACGAATGAGGAAACAGGCACTC6400.3834195028726508No Hit
CATAGATTCCTCCAAAGACTGCAGGGTCCTAAATGTCTTTGTCCTTCTAT6340.3798249450332197No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG6280.3762303871937886No Hit
CATAGACCCCATGACTCAGCTCCTCACCAACATGCTTTTAGTCACGTCTA6120.36664489962197233No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACGAATGAGGAAACAGG6040.3618521558360642No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTAGCCCGTTCTCTCTGTT5640.33788843690652354No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT5360.32111383365584506No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGCATTAGGAAGTCTTCT5200.3115283460840288No Hit
CATAGACCCCATGACTCAGCTCCTCAATCCTGTGTTCATGGCTTCTATGT5090.3049383233784051No Hit
CATAGATCTAGCCCATCACTTCAGCATGGGTCATTGTGAGGATTAAATGT5000.2995464866192584No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTGTGGGCTGGTGTTTTCCTTGATC4900.2935555568868733No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACCCTGGGAGAAGAAAT4890.2929564639136348No Hit
CATAGAGCAAGCCCTCTAAGCCTATCACTCTCCCACCATTCAGACTCTAT4660.27917732552914887No Hit
CATAGATTCCTCCAAAGACTGCAGGGCTGGGTCCTAAATGTCTTTGTCCT4640.27797913958267184No Hit
CATAGATTCCTCCAAAGACTGCAGGGGTTAACAACAACAAAACTCGTGAC4580.2743845817432407No Hit
CATAGATGGCCCAGAATCCTTTGTAGAACGCCATGCTGAAGTCCCATGAT4550.2725873028235252No Hit
CATAGATCTAGCCCATCACTTCAGCATACCAACATGCTTTTAGTCACGTC4300.25760997849256223No Hit
CATAGATTCTTTCCTGGCTGTGGGTGTGGGTCCTAAATGTCTTTGTCCTT4060.24323174713483786No Hit
CATAGACCAGTTACCACAAGAAGCAATGTGCTCGTATCTTGGCCATCTAT4010.24023628226864527No Hit
CATAGATTCTTTCCTGGCTGTGGGTGCATAAAAACTGTCGGAGGTCTATG3980.23843900334892973No Hit
CATAGACCAGTACGCCTTACCCCTTGCATAGACCAACATGCTTTTAGTCA3830.22945260875035195No Hit
CATAGATGCCACCACACCCAGTTAATGAATGATGGGAGTGTCTGCTGGTC3810.22825442280387495No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGTCGTCAGTGTACCCTGGG3760.22525895793768236No Hit
CATAGAACATTGATTCCTGGCATGTCCCATGATTTACCATCACAAATTTT3580.21447528441938904No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG3510.21028163360671945No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTGCATAAAAACTGTCGGAG3500.2096825406334809No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCAGCCCGTTCTCTCTGTT3420.20488979684757275No Hit
CATAGATGGGACAGCGACAATGACAGGAATCAATAACACGCACAAAGGCA3380.2024934249546187No Hit
CATAGATCTAGCCCATCACTTCAGCATCGCAGGCCCTTCAGCATCATTTC3200.1917097514363254No Hit
CATAGACCCTCTCTTACCCTTCCACCATTCATGTCAGACCCAGGCTACAC3150.1887142865701328No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG3090.1851197287307017No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACGAATGAGGAAACAGGCACTCT2940.17613333413212395No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACTGTTAATATAGAAGAGACACA2930.17553424115888544No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTACCCTGGGAGAAGAAATGTT2710.16235419574763807No Hit
CATAGATGGTATTTGAGTGGGGAAACAGAACGAATGAGGAAACAGGCACT2630.15756145196172994No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGCTGGTGTTTTCCTTGATCTATG2590.15516508006877588No Hit
CATAGACCCCATGACTCAGCTCCTCATTCTAAAAAAGAACGATGAAATAC2540.1521696152025833No Hit
CATAGACCAGTTACCACAAGAAGCAATGATGGGAGTGTCTGCTGGTCTAT2460.14737687141667516No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTGTAGCCCGTTCTCTCTGTTGTGT2420.14498049952372108No Hit
CATAGAGCAACCCCAGCAGTCTGAGAAAAGATGCAGTACAGCTCTATGTG2350.14078684871105146No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGACAGTTGTGGAAAGTGCA2320.13898956979133592No Hit
CATAGATGCCACCACACCCAGTTAATACACTGATGAGCATGCCTTTGATA2290.13719229087162035No Hit
CATAGATCTAGCCCATCACTTCAGCACTCTCCCACCATTCAGACTCTATG2230.13359773303218925No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTCCTTCCTTTCAATAGC2180.13060226816599668No Hit
CATAGATGGCCCAGAATCCTTTGTAGAACATGAGCATGCCTTTGATAAAA2140.12820589627304263No Hit
CATAGATCTAGCCCATCACTTCAGCATCAGCAGGCCCTTCAGCATCATTT2050.12281405951389596No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGACGAATGAG2040.12221496654065746No Hit
CATAGATCTCCTCTCTGTAATGCACCAACATGCTTTTAGTCACGTCTATG2010.1204176876209419No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGGCAGGCCCTTCAG1930.11562494383503376No Hit
CATAGACCAGTACGCCTTACCCCTTGTTGTCTTTATGGTGTCCTCATCTA1910.11442675788855673No Hit
CATAGACCCTCTCTTACCCTTCCACCTCATAGACCTCCCATGGGTCCTAA1870.11203038599560265No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA1780.10663854923645602No Hit
CATAGATTCCTCCAAAGACTGCAGGCCCTTCAGCATCATTTCTATGTGTA1770.1060394562632175No Hit
CATAGACCCTCTCTTACCCTTCCACCATTCACTCTCCCACCATTCAGACT1670.10004852653083232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)