FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005806950

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005806950
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40577
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1679741.395371762328416No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT12423.0608472780146387No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACATCTATGTGTAG12383.0509894767972003No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAAGGGAGAATCTATGTGTA10392.5605638662296375No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACCATG6961.7152574118342905No Hit
CATAGAACCAACCCTGATTCTGCTGCTCACTCTTTGGGTTCTATGTGTAG6881.6955418093994135No Hit
CATAGAACAATCAGGCACCCACCATGCTGAAGTCCCATGATCTATGTGTA5201.2815141582669987No Hit
CATAGAGGCGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA4991.2297607018754466No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAAGGGAGAAGAATCTATGT4391.08189368361387No Hit
CATAGATGTTGTTGTTCTGTTGCCCAATATGAACAGAAAGAAGCTCTATG3580.8822732089607414No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAATTCTCTATGTG3430.845306454395347No Hit
CATAGATCTCAAACAGCCTCTCCCAGGAAAGTTGGAACCTATCAGTGTCT3320.8181975010473914No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCGAAAAACACCCTCTATGTGT2800.6900460852206916No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCGTGCTCTTGGC2710.6678660324814549No Hit
CATAGAGCCATCATCATTTCTCACCCAGGGTAATTCTGGCCTTGTTCTAT2520.6210414766986224No Hit
CATAGATGTTGTTGTTCTGTTCCCCAATATGAACAGAAAGAAGCTCTATG2370.5840747221332282No Hit
CATAGAACAATCAGGCACCCACCATGCCCAGCTAATTTTTGTATTTTTAG2350.5791458215245089No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTCTATGTGTAGAACCATGTCGTC2240.5520368681765533No Hit
CATAGATGAAAGAGCATTGGTTGTGACACCGAAAAACACCCTCTATGTGT2180.5372501663503956No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTGTGTGGCCAACAGGAAGGTCTA2170.534785716046036No Hit
CATAGAAAGGGACAAGGGCTCACTCTGCTGCTCACTCTTTGGGTTCTATG1460.35980974443650343No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTATAGAGGTTTCCTGGGCAT1410.3474874929147054No Hit
CATAGATCCCTGGCAAGAATTCCTCTTCTTCCTCCTCCTGTCTATGTGTA1400.3450230426103458No Hit
CATAGATAGCAGCAATCTCAGGCCTGGGAGACCCCATATCTACCAAAGAT1350.3327007910885477No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAAATTCTCTTGACA1290.31791408926239No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGAAGCTTTGAGAT1190.2932695862187939No Hit
CATAGAGCCATCATCATTTCTCACCCAGGAAAGTTGGAACCTATCAGTGT1170.28834068561007464No Hit
CATAGATGTTGTTGTTCTGTTGCCCACTCTTTGGGTTCTATGTGTAGAAC1110.273553983783917No Hit
CATAGAGCCATCATCATTTCTCACCCAGCATAGAGCCATTGTCGCCTTCT1100.2710895334795574No Hit
CATAGATGTTGTTGTTCTGTTGCCCATGTCGTCAGTGTAGAGGCAAGGGT1090.2686250831751978No Hit
CATAGATCTCAAACAGCCTCTCCCAGGGTAATTCTGGCCTTGTTCTATGT970.23905167952288242No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA960.2365872292185228No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCATGTCGTCAGAAGCTTTGAG950.23412277891416317No Hit
CATAGACAAGCCTGCCAAGACCTCTCGTCAGTGTACCAAAAGCACAAGGG920.22672942800108434No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA920.22672942800108434No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA910.22426497769672474No Hit
CATAGAGCCATCATCATTTCTCACCCAGAAGCTTTGAGATTTGTGTCTGT900.22180052739236514No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGTATGCAGTCTGT890.2193360770880055No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTCCCAGCTAGGAGGCTGAAA860.21194272617492668No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAAATTCTCTTGAC840.20701382556620745No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCCTCTATGTGTAGAACCATGTCGT840.20701382556620745No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA800.197156024348769No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGCCCGCGCAGAGCCTTCAGGTCA790.1946915740444094No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACCAAAAGCACAAG770.18976267343569017No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCATGACCTTAGC770.18976267343569017No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGAAAGTTGGAACCTATCAGTGTC750.18483377282697094No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG750.18483377282697094No Hit
CATAGAAAGGGACAAGGGCTCACTCTCTGCTGCTCACTCTTTGGGTTCTA690.17004707100081326No Hit
CATAGAGATCTTCTCGGCTTAGCGGCCATTGTCGCCTTCTCTTCTCTATG680.16758262069645366No Hit
CATAGATGTTGTTGTTCTGTTGCCCATGTCGTCAGTGTAGAAGCTTTGAG680.16758262069645366No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA680.16758262069645366No Hit
CATAGATCCAGCTTCATCCATGTCCCTACAAAGGACATGAACTCATCCTT670.16511817039209403No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA670.16511817039209403No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTGAGGTTTCCTGGGC670.16511817039209403No Hit
CATAGATCAAGGTGTGAGCATGGTCCCACTTCCCGAGTGTTAGACCAAGG650.16018926978337483No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA650.16018926978337483No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGCAGGGTAATTCTGGC630.1552603691746556No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGTCTCCTCCGATGCTTATTACAT610.15033146856593638No Hit
CATAGAGCCATCATCATTTCTCACCCAGTATGCAGTCTGTGAGCTGTCTA580.14293811765285755No Hit
GATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA580.14293811765285755No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGTAGAGCCTTCAGGTCA540.1330803164354191No Hit
CATAGAGGTGAGCGGCTGTCTCCAGTGTAGTATGCAGTCTGTGAGCTGTC530.13061586613105947No Hit
CGTAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA530.13061586613105947No Hit
CATAGAAAGGGACAAGGGCGCACTCTAGCCTGGGAGACATCTATGTGTAG500.12322251521798062No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTCTAGAGGTTTCCTGGGCATCAA500.12322251521798062No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA500.12322251521798062No Hit
CATAGAGATCTTCTCGGCTTAGCGGCTGTCTCCACAAGTCCGCGCAGAGC490.12075806491362102No Hit
CATAGAGGAAAGAACAACTGCGGACGTAGCAGAGACTTGGTCTCATAGAG480.1182936146092614No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA470.1158291643049018No Hit
CATAGATAGCAGCAATCTCAGGCCTCATAGATCTGTGACACCGAAAAACA470.1158291643049018No Hit
TATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA470.1158291643049018No Hit
CATAGATCCCTGGCAAGAATTCCTCATGGTGGGAGTATACTGATAGCTCT470.1158291643049018No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTGCTGCTCACTCTTTG440.10843581339182295No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCCATTGTCGCCTTCTCTTCTCTAT440.10843581339182295No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACATTTATCGGGAGCCACAGA430.10597136308746334No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGACA430.10597136308746334No Hit
CATAGAGGTGAGCGGCTGTCCCCACAAGTCCGCGCAGAGCCTTCAGGTCA420.10350691278310373No Hit
CATAGATGTTGTTGTTCTGTTGCCCACACTGAAACATTTTCTGGTCAGCT420.10350691278310373No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTCAGGAAAGTTGGAA420.10350691278310373No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAATTACATAGACCCTTAGG420.10350691278310373No Hit
CATAGATCTAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT410.10104246247874411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)