FastQCFastQC Report
Wed 8 May 2024
EGAF00005807008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87480
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1258814.38957475994513No Hit
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT1018311.640374942844078No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG58726.712391403749428No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG50855.81275720164609No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG42974.911979881115683No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC36564.179240969364426No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG31953.652263374485597No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG23622.7000457247370826No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT19272.2027892089620487No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT17542.005029721079104No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT17181.9638774577046183No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA15921.8198445358939184No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG13931.592363968907179No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC12591.4391860996799268No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA12141.38774577046182No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC9771.1168267032464563No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA8550.977366255144033No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC6870.7853223593964336No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGTGTAGAACCATG6450.7373113854595336No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACGAATGAGGAAACAGGCACTC5890.6732967535436671No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC5510.6298582533150434No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT5010.5727023319615913No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGTGCTCGTATCTTGG4440.5075445816186557No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT3930.4492455418381345No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT3620.41380887059899407No Hit
CATAGAGCAACAATGAAGGTGCATAAAAACTGTCGGAGGTCTATGTGTAG3540.40466392318244165No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA3490.39894833104709654No Hit
CATAGAAGCATCCAGGTTTCTCATTTGTCAGACCCAGGCTACACATCTAT3280.37494284407864653No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG3090.35322359396433467No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT3040.3475080018289895No Hit
CATAGATTCAGAGAAGGACAGCGTGGGGGGTCCTAAATGTCTTTGTCCTT2860.3269318701417467No Hit
CATAGATTCTTTCCTGGCTGTGGGTGCATAAAAACTGTCGGAGGTCTATG2820.3223593964334705No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT2560.2926383173296754No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT2480.283493369913123No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG2370.2709190672153635No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGTGGGTTGAGGGAGTCTTCTCTATG2360.2697759487882945No Hit
CATAGAATCTGGTTCAAGCACACAGTCTATGGGGTCCTAAATGTCTTTGT2290.26177411979881116No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG2260.258344764517604No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGTCGTCAGTGTACCCTGGG2130.24348422496570646No Hit
CATAGATCTAGCCCATCACTTCAGCATCGCAGGCCCTTCAGCATCATTTC1960.2240512117055327No Hit
CATAGAACATTGATTCCTGGCATGTCCCATTGTAGATTTCTTTCACCTCC1920.21947873799725653No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG1870.21376314586191128No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT1840.21033379058070417No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGCAGGCCCTTCA1790.20461819844535892No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCAACATGCTTTTAGTCAC1730.19775948788294467No Hit
CATAGATGGTATTTGAGTGGGGAAACAGGCCCTTCAGCATCATTTCTATG1620.1851851851851852No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCGCAGGCCCTTCAGCATC1560.17832647462277093No Hit
CATAGAGCTAATAAAGACATACCTGAGCCAGGTGCGATGGCTTTCTGACT1550.17718335619570186No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTGCATAAAAACTGTCGGAG1530.1748971193415638No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGGTGGGTTGAGGGAGTC1430.16346593507087334No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGCAGGCCCT1390.15889346136259716No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCCAGGCCCTTCAGCATCA1370.15660722450845907No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGAGCATGCCT1360.15546410608139005No Hit
CATAGATCTCACCGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT1230.14060356652949246No Hit
CATAGAACATTGATTCCTGGCATGTCCCATGATTTACCATCACAAATTTT1180.13488797439414724No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATACGAATGAGGAAA1100.1257430269775949No Hit
CATAGATGGCCCAGAATCCTTTGTAGAACCATGTCGTCAGTGTGTAAAGG1100.1257430269775949No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGAGACAGTTGTGGAAAGTGC1090.12459990855052583No Hit
CATAGAGCTAATAAAGACATACCTGAGCCAGGGTGGGTTGAGGGAGTCTT1080.12345679012345678No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACGAATGAGGAAACAGGCAC1070.12231367169638775No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTTGTGGAAAGTGCAATGAGTCTAT1050.12002743484224966No Hit
CATAGATCTAGCCCATCACTTCAGCATCAGCAGGCCCTTCAGCATCATTT1020.11659807956104253No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCAGGC1010.11545496113397348No Hit
CATAGATGGGACAGCGACAATGACAGTGCATAAAAACTGTCGGAGGTCTA990.11316872427983539No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT990.11316872427983539No Hit
CATAGATTCAGAGAAGGACAGCGTGGTACACATAGATGCCTGGCCAACTG980.11202560585276634No Hit
CATAGATTCCTCCAAAGACTGCAGGGTTCTTGTCCAAGCAGCATCAGGGG960.10973936899862827No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGTCGTCAGTGTAACTGGCT900.102880658436214No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCAGCA890.10173754000914494No Hit
CATAGACCCCATGACTCAGCTCCTCACTCTCCCACCATTCAGACTCTATG890.10173754000914494No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)