FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24355
Sequences flagged as poor quality0
Sequence length150
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAAGAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG413016.957503592691438No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA15426.331348799014576No Hit
CATAGACTTCAGCCCTCACAAGCCTTACCTCAAATGCCAGGCTCTATGAG14676.023403818517758No Hit
CATAGAGGGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT12985.329501129131596No Hit
CATAGACACATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA11534.734140833504414No Hit
CATAGAGGGTGCTCCTGTACTGGGTAGTGGTAGTCTATGAGACCAAGTCT7102.9152124820365426No Hit
CATAGACACATGTAGGATGGGGTGGCTGGGCATTGCTCTTGACATCTCTA6162.5292547731471977No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTAGTCTATGAGACCAAGTCT5602.2993225210429067No Hit
CATAGAAGAGTGAGACTTGAGATGGGAGGAGAGGTCAAGGTGGGAGGATG5212.1391911311845617No Hit
CATAGACTTCAGCCCTCACAAGCCTTGGTATATTTTCTAAAGCCTGGGAT5022.0611784027920343No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGCCAGCAAGGGAACAAA4501.8476698829809075No Hit
CATAGAAAATAATGTGGCTGGGCATTGCTCTTGACATCTCTATGAGACCA4391.8025046191747076No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC4271.7532334222952168No Hit
CATAGACACATGTAGGATGGGGTGGCTGAAGTCTACCAGTAGCAAGATAG4251.7450215561486349No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTGACTGTGTTAATTTAAAAGA4161.7080681584890167No Hit
CATAGATCATGGGACTTCAGCATGGGCATTGCTCTTGACATCTCTATGAG4141.699856292342435No Hit
CATAGAAAATAATGTGGCCGGGCATGGGCATTGCTCTTGACATCTCTATG3461.4206528433586532No Hit
CATAGAGGTGTCCTTTCCCCACTTTAACACTGCCAGCAAGGGAACAAAAC3121.2810511188667626No Hit
CATAGAAAATAATGTGGCCGGGCATGGTATATTTTCTAAAGCCTGGGATC2611.0716485321289264No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTACACTGACGACATG2611.0716485321289264No Hit
CATAGAAAGTCTGGACCAAGTGCCTTACCTCAAATGCCAGGCTCTATGAG2601.0675425990556355No Hit
CATAGACACATGTAGGATGGGGTGGCTGTCATGATTATCACCTTCTATGA2471.0141654691028537No Hit
CATAGACACATGTAGGATGGGGTGGGCATTGCTCTTGACATCTCTATGAG2200.9033052761239991No Hit
CATAGAAGAGTGAGACTTGAGATGGGAGGATAGGTCAAGGTGGGAGGATG1940.7965510162184356No Hit
CATAGACTGGTCTCGAACTCCCAACCACCTATCTACCCCCGGTCTATGAG1940.7965510162184356No Hit
CATAGAGCTATCTGGCAAAAACCCATCCTACATGTGGTATATTTTCTAAA1730.7103264216793266No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTATATTTTCTAAAGCCTGGGATC1700.6980086224594539No Hit
CATAGAAAAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG1290.5296653664545268No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTATATTTTCTAAAGCCTGGG1160.476288236501745No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGTGCTGGGTAGTGGTAGTCT1150.47218230342845413No Hit
CATAGAGGTGTCCTTTCCCCACTTTACACTGACGACATGGTTCTACACAT1100.45165263806199957No Hit
CATAGATGAAAGACAAGCAGGGAAGCCAGCAAGGGAACAAAACTCTATGA940.3859577088893451No Hit
CATAGACACATGTAGGATGGGGTGGCTGCCATGATTGTAAGTTTCTTGAG920.3777458427427633No Hit
CATAGACACATGTAGGATGGGGTGGAGACAGCCGCTCACCTCTATGAGAC720.2956271812769452No Hit
CATAGAGGGTGCTCCTGTACTGGGTGTGCTGGGTAGTGGTAGTCTATGAG700.28741531513036334No Hit
CATAGAGGGTGCTCCTGTACTGGGTGCCATGATTGTAAGTTTCTTGAGTC690.28330938205707246No Hit
CATAGAGGGTTGGAGATGGGGAAAGGACACCTCAGTTGCAATATAGATGA670.27509751591049064No Hit
CATAGAACCAAAAATGGCTAGGCATGGGCATTGCTCTTGACATCTCTATG630.258673783617327No Hit
CATAGACACATGTAGGATGGGGTGGAGGAAGATCAATGCTGCTTCTATGA540.22172038595770888No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCCCTATGAGACCA510.20940258673783615No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTTGGCTGTCATGATTATCACC500.20529665366454528No Hit
CATAGAGGGTGCTCCTGTACTGGCTGTGCTGGGTAGTGGTAGTCTATGAG460.18887292137138165No Hit
CATAGAGCCACCATGTACTTCTATATAGCTTGGTATATTTTCTAAAGCCT450.18476698829809074No Hit
CATAGACACATGTAGGATGGGGTGGCTCCTGTGCTGGGTAGTGGTAGTCT450.18476698829809074No Hit
CATAGAGAGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT440.18066105522479983No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGACAGCCGCTCACCTCTATGAG440.18066105522479983No Hit
CATAGATCATGGGACTTCAGCATGGCTGTCATGATTATCACCTTCTATGA430.17655512215150893No Hit
CATAGAAAGTCTGGACCAAGTGCCTCCGTCCCTCTATGAGACCAAGTCTC430.17655512215150893No Hit
CATAGAAGCATGGAAGACAAACAGCATGGGCATTGCTCTTGACATCTCTA430.17655512215150893No Hit
CATAGACACATGTAGGATGGGGTGGAGGACGATCAATGCTGCTTCTATGA420.17244918907821802No Hit
CATAGACACATGTAGGATGGGGTGGAGGAGGATCAATGCTGCTTCTATGA410.1683432560049271No Hit
CATAGACACATGTAGGATGGGGTGGAGGATGATCAATGTTGCTTCTATGA410.1683432560049271No Hit
CATAGAAGAGTGAGACTTGAGATGGGATCAGACTTGAGATGGGATCAGAC400.1642373229316362No Hit
CATAGAACATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA390.16013138985834532No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGGATGATCAATGCTGCTTCTAT390.16013138985834532No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTGCTACCGTATGCCATGATTGTAA360.1478135906384726No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGCCATCACAGTTCATTG340.1396017244918908No Hit
CATAGATCATGGGACTTCAGCATGGCTGCCATGATTGTAAGTTTCTTGAG320.13138985834530897No Hit
CATAGACCCATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA300.12317799219872716No Hit
CATAGATGAAAGACAAGCAGGGAAGCTATGGGATCAGACTTTATGTGCAA300.12317799219872716No Hit
CATAGAAAATAATGTGGCCGGGCATGGAGACAGCCGCTCACCTCTATGAG300.12317799219872716No Hit
CATAGAGAGTGCTCCTGTACTGGGTAGTGGTAGTCTATGAGACCAAGTCT270.11086019297885444No Hit
CATAGAGGGTGCTCCTGTACTGGGTGCTGTGCTGGGTAGTGGTAGTCTAT260.10675425990556354No Hit
CATAGAGGGTTGGAGATGGGGAAAGGTGGAGGATGATCAATGCTGCTTCT260.10675425990556354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)