FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45847
Sequences flagged as poor quality0
Sequence length150
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAAGAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG640413.968198573516261No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA40278.78356271948001No Hit
CATAGACACATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA33717.352716644491461No Hit
CATAGAGGGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT31066.77470717822322No Hit
CATAGACACATGTAGGATGGGGTGGCTGGGCATTGCTCTTGACATCTCTA19964.353610923288328No Hit
CATAGAAAATAATGTGGCTGGGCATTGCTCTTGACATCTCTATGAGACCA16923.6905359129277815No Hit
CATAGAGGGTGCTCCTGTACTGGGTAGTGGTAGTCTATGAGACCAAGTCT16063.502955482365258No Hit
CATAGACTTCAGCCCTCACAAGCCTTACCTCAAATGCCAGGCTCTATGAG14443.149606299212598No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTAGTCTATGAGACCAAGTCT13823.0143738957838027No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTGCTGGTCTGTTCGGCCACTCATG11662.543241651580256No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC11362.477806617663097No Hit
CATAGACTTCAGCCCTCACAAGCCTTGGTATATTTTCTAAAGCCTGGGAT11242.451632604096233No Hit
CATAGAGGTGTCCTTTCCCCACTTTACACTGACGACATGGTTCTACACAT8541.8627172988417997No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTGTGTGTGTGTGTGT6631.4461142495692194No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAATGCCATCACAGTTCATTGTA5681.2389033088315484No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTACACTGACGACATG5441.186555281697821No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGGATGATCAATGCTGCTTCTAT5421.1821929461033438No Hit
CATAGAAAATAATGTGGCCGGGCATGCCATGATTGTAAGTTTCTTGAGTC5131.1189390799834231No Hit
CATAGAAAATAATGTGGCCGGGCATGACACTGCCATCACAGTTCATTGTA4901.0687722206469343No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGACGACATGGTTCTACA4430.9662573341767183No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTATATTTTCTAAAGCCTGGG4180.9117281392457521No Hit
CATAGAAAATAATGTGGCCGGGCATGGGCATTGCTCTTGACATCTCTATG3940.8593801121120247No Hit
CATAGACTTCAGCCCTCACAAGCCTTGGATCTATGAAGGTCAAGGTGGGA3930.857198944314786No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGATGAGGGTATAAGGTC3840.8375684341396383No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTATATTTTCTAAAGCCTGGGATC3590.7830392392086722No Hit
CATAGACACATGTAGGATGGGGTGGCTGTCATGATTATCACCTTCTATGA3070.669618513752263No Hit
CATAGACACATGTAGGATGGGGTGGGCATTGCTCTTGACATCTCTATGAG2520.5496542849041376No Hit
CATAGAGCTATCTGGCAAAAACCCATCAGGTCAAGGTGGGAGGATGGTCT2390.5212991035400353No Hit
CATAGATCATGGGACTTCAGCATGGGCATTGCTCTTGACATCTCTATGAG2090.45586406962287607No Hit
CATAGAAAGTCTGGACCAAGTGCCTTACCTCAAATGCCAGGCTCTATGAG1940.42314655266429646No Hit
CATAGACACATGTAGGATGGGGTGGCTCCTGTGCTGGGTAGTGGTAGTCT1740.3795231967195236No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGACAGCCGCTCACCTCTATGAG1730.377342028922285No Hit
CATAGAAGCATGGAAGACAAACAGCACACTGACGACATGGTATATTTTCT1340.292276484829978No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGTGCTGGGTAGTGGTAGTCT1280.27918947804654615No Hit
CATAGATGAAAGACAAGCAGGGAAGCCAGACAGGATGCGCAGATGGTCTA1260.2748271424520688No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAAGAGGTCAAGGTGGGAGGATG1240.27046480685759156No Hit
CATAGACACATGTAGGATGGGGTGGCTGCCATGATTGTAAGTTTCTTGAG1170.2551966322769211No Hit
CATAGAAAGTCTGGACCAAGTGCCTCCGTCCCTCTATGAGACCAAGTCTC1160.25301546447968243No Hit
CATAGAAAGTCTGGACCAAGTGCCTCCTGTGCTGGGTAGTGGTAGTCTAT1000.21811677972386417No Hit
CATAGAACCAAAAATGGCTAGGCATGGGCATTGCTCTTGACATCTCTATG950.20721094073767096No Hit
CATAGATGAAAGACAAGCAGGGAAGGTCAAGGTGGGAGGATGGTCTATGA940.2050297729404323No Hit
CATAGAACCAAAAATGGCTAGGCATGTTTATCATTGGCTGTCATGATTAT840.1832180949680459No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACCGTATGGGATCAGACTTT800.17449342377909133No Hit
CATAGAGGTGTCCTTTCCCCACTTTACCTCAAATGCCAGGCTCTATGAGA730.15922524919842082No Hit
CATAGACTTCAGCCCTCACAAGCCTTTGCTACCGTAGGTCAAGGTGGGAG730.15922524919842082No Hit
CATAGAGGGTGCTCCTGTACTGGGTGTGCTGGGTAGTGGTAGTCTATGAG710.15486291360394355No Hit
CATAGACACATGTAGGATGGGGTGGTATATTTTCTAAAGCCTGGGATCTA630.1374135712260344No Hit
CATAGAAAATAATGTGGCCGGGCATGGAGACAGCCGCTCACCTCTATGAG630.1374135712260344No Hit
CATAGATCATGGGACTTCAGCATGGCGTCAGTGTGGAGACAGCCGCTCAC590.12868890003707986No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTACCGTATGCCAGCAAGGGAACAA520.11342072545640937No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTTATGTAGACAGGGATTGATCTC520.11342072545640937No Hit
CATAGACACATGTAGGATGGGGTGGAGACAGCCGCTCACCTCTATGAGAC480.10469605426745479No Hit
CATAGAGGTGTCCTTTCCCCACCTTACCTCAAATGCCAGGCTCTATGAGA470.10251488647021614No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTACTGGAGGATGATC460.10033371867297751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)