FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45847
Sequences flagged as poor quality0
Sequence length150
%GC35

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATTGCACATAAAGTCTGATCCCATCTCAAGTCTCACTCTTCTATG642914.022727768447227No Hit
CATAGAGATGTCAAGAGCAATGCCCGGCCACATTATTTTCTATGTGTAGA39998.722490021157329No Hit
CATAGACTACCACTACCCAGCACAGGAGCACCCTCTATGTGTAGAACCAT38678.434575871921828No Hit
CATAGAAGCAGCATTGATCATCCTCCACCCCATCCTACATGTGTCTATGT33317.265469932601914No Hit
CATAGAGATGTCAAGAGCAATGCCCAGCCACCCCATCCTACATGTGTCTA19534.259820708007068No Hit
CATAGAGATGTCAAGAGCAATGCCCAGCCACATTATTTTCTATGTGTAGA17433.801775470586952No Hit
CATAGACTACCACTACCCAGTACAGGAGCACCCTCTATGTGTAGAACCAT16113.5138613213514516No Hit
CATAGAGCCTGGCATTTGAGGTAAGGCTTGTGAGGGCTGAAGTCTATGTG14013.055816083931337No Hit
CATAGACTACCACCACCCAGTACAGGAGCACCCTCTATGTGTAGAACCAT13392.920583680502541No Hit
CATAGACATGAGTGGCCGAACAGACCAGCAGAGGCACTTGGTCCAGACTT11602.5301546447968244No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA11382.482168953257574No Hit
CATAGATCCCAGGCTTTAGAAAATATACCAAGGCTTGTGAGGGCTGAAGT10982.3949222413680284No Hit
CATAGAACATCGCACACACATGGAACACACACACACACACACACACACAC6231.3588675376796737No Hit
CATAGAGAATACAATGAACTGTGATGGCATTGCTCTTTGACTTATGATGG5641.2301786376425938No Hit
CATAGAAGCAGCATTGATCATCCTCCACCCAGTACAGGAGCACCCTCTAT5441.186555281697821No Hit
CATAGACTCAAGAAACTTACAATCATGGCATGCCCGGCCACATTATTTTC5141.1211202477806617No Hit
CATAGAGAATACAATGAACTGTGATGGCAGTGTCATGCCCGGCCACATTA4991.088402730822082No Hit
CATAGATCCCAGGCTTTAGAAAATATACCACCACCCAGTACAGGAGCACC4200.9160904748402294No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATGTCGTCAGTGTACTCCTAT4100.894278796867843No Hit
CATAGAGATGTCAAGAGCAATGCCCATGCCCGGCCACATTATTTTCTATG3980.8681047833009794No Hit
CATAGACCATCCTCCCACCTTGACCTTCATAGATCCAAGGCTTGTGAGGG3900.8506554409230702No Hit
CATAGATGACATAGACCTTATACCCTCATCAGTGTAGGGATAGTTTGAGG3710.809213252775536No Hit
CATAGATCCCAGGCTTTAGAAAATATACCACCCAGTACAGGAGCACCCTC3690.8048509171810587No Hit
CATAGAAGGTGATAATCATGACAGCCACCCCATCCTACATGTGTCTATGT3120.6805243527384562No Hit
CATAGAGGGACGGAGGCAAGAGGATAGTTTGAGGGTAATGCTCTATGTGT3090.6739808493467402No Hit
CATAGAGATGTCAAGAGCAATGCCCACCCCATCCTACATGTGTCTATGTG2460.5365672781207058No Hit
CATAGACCATCCTCCCACCTTGACCTGATGGGTTTTTGCCAGATAGCTCT2360.5147556001483194No Hit
CATAGAGATGTCAAGAGCAATGCCCATGCTGAAGTCCCATGATCTATGTG2010.43841472724496694No Hit
CATAGAGCCTGGCATTTGAGGTAAGGCACTTGGTCCAGACTTTCTATGTG1860.40569721028638733No Hit
CATAGACTACCACTACCCAGCACAGGAGCCACCCCATCCTACATGTGTCT1820.3969725390974328No Hit
CATAGAGGTGAGCGGCTGTCTCCACCCAGTACAGGAGCACCCTCTATGTG1760.3838855323140009No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATGTCGTCAGTGTGCTGTTTG1430.31190699500512575No Hit
CATAGACCATCTGCGCATCCTGTCTGGCTTCCCTGCTTGTCTTTCATCTA1320.2879141492355007No Hit
CATAGACTACCACTACCCAGCACAGCATTTTAACACAGCATTGAAGTTCT1320.2879141492355007No Hit
CATAGACCATCCTCCCACCTTGACCTCTTGCTCTTTGACTTATGATGGAG1250.2726459746548302No Hit
CATAGACTCAAGAAACTTACAATCATGGCAGCCACCCCATCCTACATGTG1190.25955896787139837No Hit
CATAGACTACCACTACCCAGCACAGGAGGCACTTGGTCCAGACTTTCTAT990.21593561192662553No Hit
CATAGAGATGTCAAGAGCAATGCCCATGCCTAGCCATTTTTGGTTCTATG980.21375444412938685No Hit
CATAGAACATCGCACACACATGGAACCATGTCGTCAGTGTACTCCTATGT960.20939210853490958No Hit
CATAGACCATCCTCCCACCTTGACCTTCCCTGCTTGTCTTTCATCTATGT950.20721094073767096No Hit
CATAGAAGGTGATAATCATGACAGCCAATGATAAACATGCCTAGCCATTT930.20284860514319367No Hit
CATAGATTGCACCTAAAGTCTGATCCCATCTCAAGTCTCACTCTTCTATG740.16140641699565947No Hit
CATAGACTACCACTACCCAGCACACCCAGTACAGGAGCACCCTCTATGTG720.1570440814011822No Hit
CATAGAGCCTGGCATTTGAGGTAAAGTGGGGAAAGGACACCTCTATGTGT710.15486291360394355No Hit
CATAGATTGCACATAAAGTCTGATCCCATACGGTAGCATTTTAACACAGC690.15050057800946626No Hit
CATAGACCATCCTCCCACCTTGACCTACGGTAGCAAAGGCTTGTGAGGGC670.146138242414989No Hit
CATAGATCCCAGGCTTTAGAAAATATACCACCCCATCCTACATGTGTCTA640.13959473902327307No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCCCGGCCACATTATTTTCTATGTG630.1374135712260344No Hit
CATAGAGGGACGGAGGCACTTGGTCCAGACTTTCTATGTGTAGAACCATG620.13523240342879578No Hit
CATAGAGGTGAGCGGCTGTCTCCACACTGACGCCATGCTGAAGTCCCATG580.12650773223984121No Hit
CATAGAGCCTGGCATTTGAGGTAAGGTGGGGAAAGGACACCTCTATGTGT580.12650773223984121No Hit
CATAGAGATCAATCCCTGTCTACATAACCACCCAGTACAGGAGCACCCTC530.115601893253648No Hit
CATAGAGTTTTGTTCCCTTGCTGGCATACGGTAGAGGCACTTGGTCCAGA520.11342072545640937No Hit
CATAGAAGCAGCATTGATCATCCTCCAGTACTCCTATGTAATGTCTTATT480.10469605426745479No Hit
CATAGAGGTGAGCGGCTGTCTCCACCCCATCCTACATGTGTCTATGTGTA480.10469605426745479No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)