FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48071
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1935340.2591999334318No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT21104.3893407667824675No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACATCTATGTGTAG16403.4116203116223915No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACCATG8941.8597491210917183No Hit
CATAGAACCAACCCTGATTCTGCTGCTCACTCTTTGGGTTCTATGTGTAG7181.4936240144785837No Hit
CATAGAACAATCAGGCACCCACCATGCTGAAGTCCCATGATCTATGTGTA7051.4665806827401136No Hit
CATAGAGCCATCATCATTTCTCACCCAGGAAAGTTGGAACCTATCAGTGT6481.3480060743483597No Hit
CATAGAGGCGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA5351.1129371138524267No Hit
CATAGATCTCAAACAGCCTCTCCCAGGAAAGTTGGAACCTATCAGTGTCT5121.0650912192382103No Hit
CATAGATCTCAAACAGCCTCTCCCAGGGTAATTCTGGCCTTGTTCTATGT5101.0609307066630609No Hit
CATAGATGTTGTTGTTCTGTTGCCCAATATGAACAGAAAGAAGCTCTATG4670.9714796862973518No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAATTCTCTATGTG3980.8279420024547025No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCGAAAAACACCCTCTATGTGT3790.7884171329907844No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGTGTGATCATATC3690.7676145701150381No Hit
CATAGATGTTGTTGTTCTGTTCCCCAATATGAACAGAAAGAAGCTCTATG3330.6927253437623515No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGAAGCTTTGAGAT2430.5055022778806348No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAAATTCTCTTGACA2270.4722181772794408No Hit
CATAGATAGCAGCAATCTCAGGCCTCCAAACTTGGACTGAAATCTGTACC2270.4722181772794408No Hit
CATAGATGAAAGAGCATTGGTTGTGACACCGAAAAACACCCTCTATGTGT2260.4701379209918662No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTGTCTCATAGAGGTTTCCTG2140.44517484554097064No Hit
CATAGATCTCAAACAGCCTCTCCCAGAAGCTTTGAGATTTGTGTCTGTTC2010.4181315138025004No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACCAAAAGCACAAG1840.38276715691373175No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTGTGTGGCCAACAGGAAGGTCTA1700.353643568887687No Hit
CATAGAGCCATCATCATTTCTCACCCAGGGTAATTCTGGCCTTGTTCTAT1670.34740280002496304No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCACGACCTTAGC1550.3224397245740675No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCGTGCTCTTGGC1550.3224397245740675No Hit
CATAGAAAGGGACAAGGGCTCACTCTGCTGCTCACTCTTTGGGTTCTATG1530.31827921199891823No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGAGGCAAGGGTAC1460.30371741798589585No Hit
CATAGATCCCTGGCAAGAATTCCTCTTCTTCCTCCTCCTGTCTATGTGTA1450.3016371616983212No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1360.2829148551101496No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAAGGGACCAAAAGCACAAG1320.27459382995985104No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGAAAGTTGGAACCTATCAGTGTC1270.26419254852197793No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTGAGGTTTCCTGGGC1250.26003203594682867No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTCAGGAAAGTTGGAA1250.26003203594682867No Hit
CATAGAGGGCTATCCTTGCTCAGATCAGTGTGCCATACCAAGAATAAGAA1160.241309729358657No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAAATTCTCTTGAC1130.2350689604959331No Hit
CATAGATAGCAGCAATCTCAGGCCTGGGAGACCCCATATCTACCAAAGAT1040.21634665390776142No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTGGTTCCCCAATATGAACAG960.1997046036071644No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA940.19554409103201514No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGAAGCTTTGAGATTTGTGTCTGTT920.19138357845686588No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA920.19138357845686588No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA910.18930332216929127No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA910.18930332216929127No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCCTCATAGAGAAGCTTTGAGATTT880.18306255330656737No Hit
CATAGATAGCAGCAATCTCAGGCCTCTACGGTAGCAGGAAAGTTGGAACC870.18098229701899274No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAGGTTTCCTGGGCATCAAGTC830.17266127186869423No Hit
CATAGAAAGGGACAAGGGCTCACTCTCTGCTGCTCACTCTTTGGGTTCTA810.16850075929354497No Hit
CATAGATGTTGTTGTTCTGTTGCCCACTCTTTGGGTTCTATGTGTAGAAC800.16642050300597033No Hit
CATAGATCAAGGTGTGAGCATGGTCCTCCGATGCTTATTACATTGTTCTA800.16642050300597033No Hit
CATAGACACAACGTTTGAGACTGCCTAGGGCCAGAAGCTTTGAGATTTGT770.16017973414324643No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA740.15393896528052256No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAGTGGTGCCATACCAAGAATA720.1497784527053733No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA720.1497784527053733No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTGCTGCTCACTCTTTG710.14769819641779866No Hit
CATAGAGATCTTCTCGGCTTAGCGGCCTACACTATGGCTTAATGTTTCTC710.14769819641779866No Hit
CATAGATCCAGCTTCATCCATGTCCCTGAAAAGAACACGAATGAGGAAGA700.14561794013022406No Hit
CATAGAGGGCTATCCTTGCTCAGATCACATTTATCGGGAGCCACAGATCT700.14561794013022406No Hit
CGTAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA700.14561794013022406No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA680.1414574275550748No Hit
CATAGAGGTGAGCGGCTGTCTCCAGTGTAGTATGCAGTCTGTGAGCTGTC660.13729691497992552No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGCTGGAGTGCAGTAGTGTGATCT660.13729691497992552No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGCGCCTTCAGGTCA640.13313640240477628No Hit
CATAGAAAGGGACAAGGGCGCACTCTAGCCTGGGAGACATCTATGTGTAG610.12689563354205238No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGC610.12689563354205238No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTATGCAGTCTGTGAGCTGTC600.12481537725447776No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA600.12481537725447776No Hit
CATAGATCTAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT580.1206548646793285No Hit
CATAGACTCACTCTGTCACCCAAGCTAAAGTGCAGTAGTGCCATACCAAG560.11649435210417923No Hit
CATAGAGGTGAGCGGCTGTCTCCATGTCGTCAGTGTAGTATGCAGTCTGT560.11649435210417923No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGTATGCAGTCTGT560.11649435210417923No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGCTGCTGCTCACTCTTTGGG550.11441409581660461No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTCTACAGGAAAGTTGGAACCTAT530.11025358324145534No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA520.10817332695388071No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCCATTGTCGCCTTCTCTTCTCTAT510.10609307066630608No Hit
CATAGACTCACTCTGTCACCCAAGCTTACGGTAGCAGGAAAGTTGGAACC500.10401281437873144No Hit
AATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA500.10401281437873144No Hit
CATAGATCCAGCTTCATCCATGTCCCAGTGTAACCTGTGTATATTCTCCT490.10193255809115684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)