FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152385
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG5318834.90369787052531No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG77885.110739245988778No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG58383.831085736785117No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA51053.350067263838304No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC46563.055418840437051No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT32272.1176624995898545No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC31592.0730386849099323No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG27781.8230140761886011No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA17691.160875414246809No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA16951.112314204153952No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC16431.0781901105751879No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG16291.0690028546116745No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC15421.0119106211241262No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG12990.8524461069002854No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT11670.7658234078157299No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA11580.7599173146963284No Hit
CATAGACCCTTCTCCATGCCACATCAGGGATTATCAGTAGTGCTCACATC11350.7448239656134134No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA10740.7047937789152475No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA9170.6017652656101322No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA8800.5774846605637038No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT8120.5328608458837811No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA7650.5020179151491289No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTAGTGCAGCTATATTGGAGGAA7130.4678938215703646No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAGTTTTTCCAAATATAAG6770.44426944909275845No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA6630.43508219312924495No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG6370.41802014633986284No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG6360.41736391377104043No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGCATGTTG6110.4009580995504807No Hit
CATAGAGGAAGTGCCTACCTTAAATTGATGGAGACAGCCGCTCACCTCTA5990.393083308724612No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA5940.38980214588050005No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCAGCATGTTGAGATGAATAA5730.37602126193522983No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCAGGGATTATCAGTAGTGCT5540.36355284312760444No Hit
CATAGATCATGGGACTTCAGCATGGCTAGTCCGTCACCCCTAATCTATGA5040.3307412146864849No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTTCCCCTCTCTCTGAATAACTC4760.31236670275945794No Hit
CATAGAGTCTCGCTAATAGTTTTACCTCAAAACCACTTGAACATTGCCTT4440.29136726055714146No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTTCTTATAGCCAGTGTCTCC4300.28218000459362796No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC4270.28021130688716084No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTAGTCCTGGCATATACAAGG4040.2651179578042458No Hit
CATAGAAGATCCCATAGCAGCTTTGCCTCATAGAGTTTTTCCAAATATAA3940.25855563211602195No Hit
CATAGACCCTTCTCCATGCCACATCAGTGTAGCATGTTGAGATGAATAAT3820.2506808412901532No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTT3760.2467434458772189No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATTCTTATAGCCAGTGT3650.23952488762017257No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGGGAGGGAAGGAAGGGC3150.20671325917905303No Hit
CATAGATCATGGGACTTCAGCATGGCATGTTGAGATGAATAATTGAGACT3100.2034320963349411No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG2950.19358860780260523No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT2930.19227614266496046No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTAGGATAGGA2870.18833874725202612No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA2810.18440135183909176No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGAGGGAAGGAAGGGCAAACTCTA2800.18374511927026937No Hit
CATAGAAGATCCCATAGCAGCTTTGCTCTCTCCAGAACCCACCATCTATG2780.1824326541326246No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGAAGGAGGGAAGGAAGGGCAAACT2780.1824326541326246No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG2580.1693080027561768No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG2530.16602683991206482No Hit
CATAGATCACCCAGGTAATCACTAGGTATAGTTTTTCCAAATATAAGATC2450.16077697936148572No Hit
CATAGACCCTTCTCCATGCCACATCATGCAAAGCTGGTCTATGAGACCAA2390.15683958394855135No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCATGGGTCCTTTTCACATCAT2380.15618335137972897No Hit
CATAGACCATTTGCCGCGTTCTGAAGATCATTTCCCCTCTCTCTGAATAA2270.14896479312268268No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA2240.1469960954162155No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT2230.14633986284739312No Hit
CATAGACACCTGGATCCTGTGTTGTCTTAGGTAGAGGAGTTTCAAACATC2130.1397775371591692No Hit
CATAGACCCTTCTCCATGCCACATCAAGAATGAGGAGAGTACTACTTTCT2080.13649637431505726No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG2010.1319027463333005No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG2010.1319027463333005No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCTCTCCAGAACCCACCATCTATGA1980.12993404862683336No Hit
CATAGACACCTGGATCCTGTGTTGTCTATGGAGGGAAGGAAGGGCAAACT1940.1273091183515438No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1940.1273091183515438No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCTACCGTAGACGGAGTGAGGGCAGT1920.12599665321389902No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1910.1253404206450766No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCCTATGATCGTATCTATGAG1910.1253404206450766No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGTAAGTCTATGAGACCAAGTCTTG1780.11680939725038553No Hit
CATAGATCACCCAGGTAATCACTAGGTACACTGACGACATGGTTCTACAC1770.11615316468156314No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1770.11615316468156314No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGCATGGTGACTCACACCTGTAAT1690.11090330413098402No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1670.10959083899333924No Hit
CATAGAGCTTCTGATCACTTTCGCCCACACTCATGCAAAGCTGGTCTATG1630.10696590871804967No Hit
CATAGATGTGCCTCTCCAACATTCACCAAGTCACCCAGCCTCTATGAGAC1620.10630967614922728No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG1590.10434097844276011No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCAAGAATGAGGAGAGTACTA1570.10302851330511534No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGA1540.10105981559864817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)