FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97860
Sequences flagged as poor quality0
Sequence length150
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT1079811.034130390353566No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG74537.615982015123645No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG61636.297772327815246No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG54625.5814428775802165No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG41544.244839566727979No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC40444.132434089515635No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG33063.3782955242182706No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA32973.3690987124463523No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT31283.1964030247292055No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA21042.1500102186797467No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG20562.1009605558961786No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT20242.0682607807071327No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT19622.0049049662783567No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT18481.888412017167382No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT13501.3795217657878602No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACGAATGAGGAAACAGGCACTC13071.3355814428775803No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC12331.2599632127529123No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA11321.1567545473124874No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCTAGGATTTGAGCTCATG10961.119967300224811No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT10861.1097486204782343No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC7960.8134069078275087No Hit
CATAGACCCCATGACTCAGCTCCTCAATCCTGTGTTCATGGCTTCTATGT7160.7316574698548948No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACCCTGGGAGAAGAAAT6310.6447986920089924No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG6010.6141426527692623No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA5620.5742898017576129No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT5530.5650929899856939No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT5390.5507868383404865No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGTGTAGAACCATG5220.533415082771306No Hit
CATAGATTCTTTCCTGGCTGTGGGTGCATAAAAACTGTCGGAGGTCTATG5210.5323932147966483No Hit
CATAGAGCAACAATGAAGGTGCATAAAAACTGTCGGAGGTCTATGTGTAG5160.5272838749233599No Hit
CATAGAGCTAATAAAGACATACCTGAGCCAGGTGCGATGGCTTTCTGACT5070.5180870631514408No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGACAGTTGTGGAA4870.49764970365828737No Hit
CATAGATCTAGCCCATCACTTCAGCATGCAGGCCCTTCAGCATCATTTCT4810.4915184958103413No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT4590.46903740036787245No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGTGCTCGTATCTTGG4510.4608624565706111No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG4180.4271408134069078No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGAGCATGCCTTTGAT3630.37093807480073576No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA3540.36174126302881665No Hit
CATAGACCAGTACGCCTTACCCCTTGTCAGACCCAGGCTACACATCTATG3480.35561005518087063No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACTGAATGATGGGAGTGTCTGCT3420.3494788473329246No Hit
CATAGATCTAGCCCATCACTTCAGCATCCAGGCCCTTCAGCATCATTTCT3000.30656039239730226No Hit
CATAGATTCAGAGAAGGACAGCGTGGTGGGTTGAGGGAGTCTTCTCTATG2950.3014510525240139No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGTCGTCAGTGTACCCTGGG2680.2738606172082567No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGGGCTGGTGTTTTCCTTGA2560.2615982015123646No Hit
CATAGACCAGTTACCACAAGAAGCAATGAGACAGTTGTGGAAAGTGCAAT2550.26057633353770693No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTGCATAAAAACTGTCGGAG2510.2564888616390762No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGCTGGTGTTTTCCTTGATCTATG2470.2524013897404455No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT2420.24729204986715714No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG2380.24320457796852646No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC2290.23400776619660738No Hit
CATAGATGGCCCAGAATCCTTTGTAGAACCATGATGTGCTCGTATCTTGG2070.21152667075413856No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGG2020.2064173308808502No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTTGTGGAAAGTGCAATGAGTCTAT1920.19619865113427343No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG1860.1900674432863274No Hit
CATAGAGCAACCCCAGCAGTCTGAGAAAAGATGCAGTACAGCTCTATGTG1810.18495810341303903No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT1740.17780502759043532No Hit
CATAGAACAACTTGCTCTAATACTTGGGAGAAGAAATGTTGGTCTATGTG1610.16452074391988555No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAAACAGTT1520.15532393214796647No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAGCAGGCC1410.14408338442673208No Hit
CATAGATCTAGCCCATCACTTCAGCATCGCAGGCCCTTCAGCATCATTTC1380.14101778050275904No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGCAGGCCCTTCAGC1350.13795217657878603No Hit
CATAGATCTCACCGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT1300.13284283670549765No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCAGGC1260.12875536480686695No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACCTCCTCTATGTGT1190.12160228898426323No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTAGCAGGCCCTTCAGCA1170.11955855303494789No Hit
CATAGACCCCATGACTCAGCTCCTCACTCTCCCACCATTCAGACTCTATG1160.1185366850602902No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGC1130.1154710811363172No Hit
CATAGATCTAGCCCATCACTTCAGCACAGGCCCTTCAGCATCATTTCTAT1090.11138360923768648No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCCCATTGTAGATTTCTTTCA1070.10933987328837114No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC1060.10831800531371347No Hit
CATAGATTCCTCCAAAGACTGCAGGCCCTTCAGCATCATTTCTATGTGTA1060.10831800531371347No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGCAGGCCCTTCA990.10116492949110976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)