FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences193019
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA6087231.53679171480528No Hit
CATAGACCTCCTTTCCTCCACGGCAAACACTCAAAACAGCCCTCTATGTG109965.69684849678011No Hit
CATAGATACGATCATAAGGGTGGGGCGAAAGTGATCAGAAGCTCTATGTG85764.443085913821956No Hit
CATAGACCAGCTTTGCATGAGTGTGGTTAATGAAGCTCTTCCATGTCCCA72983.780974929929178No Hit
CATAGACACCATTGGAGACCTGAGCATCCCTCATTACTCTGGTTCTATGT61153.168081898673188No Hit
CATAGACCAGCTTTGCATGAGTGTGGGAAGTAGGGAATGATTACAAGTTC58403.0256088778824886No Hit
CATAGACACACCCAACTCTGCTCAGTCTGCATAGCCACATCTATGTGTAG43312.2438205565255234No Hit
CATAGATGGTGGGTTCTGGAGAGAGCATCCCTCATTACTCTGGTTCTATG41482.1490112372357126No Hit
CATAGACCAGCTTTGCATGAGTGTGGCCTGTGTTCTTTGCATGATCTATG24091.2480636621265264No Hit
CATAGACACACCCAACTCTACTCAGTCTGCATAGCCACATCTATGTGTAG16120.8351509436894814No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCCTCTATGTATAGAACCATGTCGTC15890.8232350183142593No Hit
CATAGAGGGGAGACACTGGGGGCACAAAGTTCTATGTGTAGAACCATGTC14140.7325703687201779No Hit
CATAGACCTGACCTCATGATCTGCCTGTGTTCTTTGCATGATCTATGTGT13060.6766173278278305No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCACGGCAAACACTCAAAACAGCCCT11910.6170377009517198No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCCTTGGCCTCAGTTTCCCCTCCTTC11570.5994228547448697No Hit
CATAGACTGGCGGTGATTGCTTTCCTCCACGGCAAACACTCAAAACAGCC11260.5833622596739181No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGACACTGGGGGCACAAAGTTCT10400.5388070604448266No Hit
CATAGATGATGTGAAAAGGACCCATGGTGTCAGTGTCATGAATGTTGGAG10260.5315538884773001No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCAAGCAGATCTGTGTTCTATGTGTA9900.5129028748465176No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCTGAGACTTGGCCTCAGTTTCCCCT9330.48337210326444546No Hit
CATAGACCAGCTTTGCATGAGTGTGGCATGGAGAAGGGTCTATGTGTAGA8220.42586481123619957No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGAGGGGAGACACTGGGGGCACA8190.424310560100301No Hit
CATAGATGTTTGAAACTCCTCTACCTAAGACACTGGGGGCACAAAGTTCT8170.4232743926763686No Hit
CATAGACTTACTGCCCTCACTCCGTCTGCATAGCCACATCTATGTGTAGA8110.42016589040457153No Hit
CATAGACTTTTCCTCCAATATAGCTGCACTACTTGGCCTCAGTTTCCCCT8090.41912972298063916No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCCTGGCCTCAGTTTCCCCTCCTTCT7480.38752661655070225No Hit
CATAGAGATGATGGGATCTTATATTTGGAAAAACTTACGGTAGCAAAGCT7100.36783943549598747No Hit
CATAGATGGTGGGTTCTGGAGAGAGGGCGAAAGTGATCAGAAGCTCTATG6860.35540542640879913No Hit
CATAGAGGGGAGACACTGGCTATAAGAACTTGGTCTCATAGAGGGGAGAC6610.34245333360964464No Hit
CATAGAGTTATTCAGAGAGAGGGGAAATGAGAGAAAACTACCCCAGGCTC6580.3408990824737461No Hit
CATAGACCAAACACAGAAGACATGGCAAACACTCAAAACAGCCCTCTATG6340.32846507338655784No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGGGGAGACACTGGGGGCACAAA6290.3258746548267269No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGACTTGGTCTCATAGAGGGGAG6210.3217299851309975No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGGAGACACTGGGGGCACAAAGT6030.31240447831560625No Hit
CATAGATGATGTGAAAAGGACCCATGGCGTCAGTGTCCTTTTGCTCATCC5740.297380050668587No Hit
CATAGATGGTGGGTTCTGGAGAGAGACACTGGGGGCACAAAGTTCTATGT5590.28960879498909436No Hit
CATAGATTAGGGGTGACGGACTAGCCATGCTGAAGTCCCATGATCTATGT5390.2792471207497707No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGCAGAGACTTGGTCTCATAGAG5100.26422269310275154No Hit
CATAGACTTACTGCCCTCACTCAGTCTGCATAGCCACATCTATGTGTAGA4990.25852377227112355No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCCGGATTCAAGCAATTCTTCTATGT4950.2564514374232588No Hit
CATAGATACGATCATAAGGGTGGGGCTGGGCTCAGTGGCTTATGCCTGTA4890.2533429351514618No Hit
CATAGACCTCCTTTCCTCCACGGCAAAGCTGCTATGGGATCTTCTATGTG4560.23624617265657785No Hit
CATAGAGTTATTCAGAGAGAGGGGAAATGAGACAACACAGGATCCAGGTG4460.23106533553691605No Hit
CATAGAGTCTCAATTATTCATCTCAACATGCTGACTTGGCCTCAGTTTCC4320.22381216356938954No Hit
CATAGACTGGCGGTGATTGCTTTCCTACTTGGCCTCAGTTTCCCCTCCTT4320.22381216356938954No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCTGGCCTCAGTTTCCCCTCCTTCTA4260.22070366129759247No Hit
CATAGACTTACTGCCCTCACTCCGTCTACGGTAGCAAACACTCAAAACAG4090.21189623819416742No Hit
CAGTTTCCCCTCCTTCTATGTGTAGAACCATGTCGTCAGTGTAGATCTCG4080.21137815448220126No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCAGAGCTTGTAATCTCCCTCCAGAG4030.20878773592237035No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGGGAGACACTGGGGGCACAAAG3880.20101648024287763No Hit
CATAGACCTGACCTCATGATCTGCCTACCTCAGCCTCCCAGATTGCTGGG3800.19687181054714822No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGAGACTTGGTCTCATAGAGGGG3230.16734103896507596No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCTTCTATGTGTAGAACCATGTCGTC3180.16475062040524507No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA2880.1492081090462597No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA2860.14817194162232733No Hit
CATAGATGGTGGGTTCTGGAGAGAGCTGCACCATGATCCCGGCTCTGTCA2830.14661769048642878No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA2810.14558152306249642No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGTCTCATAGAGGGGAGACACTG2800.14506343935053026No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA2640.1367740999590714No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGATCA2590.13418368139924047No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA2550.13211134655137577No Hit
CATAGAGGGGAGACACTGGCTATAAGAATAGAGGGGAGACACTGGGGGCA2520.13055709541547725No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA2490.1290028442795787No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGAGACACTGGGGGCACAAAGTT2460.12744859314368015No Hit
CATAGAGGTGAGCGGCTGTCTCCAGAAGTCCGCGCAGAGCCTTCAGGTCA2430.12589434200778163No Hit
CATAGATGACCTGTTAATCTGCCCCCACTCAGTCTGCATAGCCACATCTA2420.12537625829581545No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG2350.12174967231205218No Hit
CATAGAGTCTCAATTATTCATCTCAACATGCCATGCTGAAGTCCCATGAT2300.11915925375222129No Hit
CATAGAGTTATTCAGAGAGAGGGGAAATGATCTATGTGTAGGGCGAAAGT2250.11656883519239039No Hit
CATAGAGGCTGGGTGACTTGGTGAATAGAGGGGAGACACTGGGGGCACAA2240.11605075148042421No Hit
CATAGACCTGACCTCATGATCTGCCTTTTGCTCATCCATTGTTGATCTAT2210.11449650034452566No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA2160.11190608178469477No Hit
CATAGACACACCCAACTCTGCTCAGTGTACTCAGTCTGCATAGCCACATC2080.10776141208896532No Hit
CATAGACTTACTGCCCTCACTCCGTCACGGTAGCAAACACTCAAAACAGC2070.10724332837699915No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA2070.10724332837699915No Hit
CATAGACCAGCTTTGCATGATGTGGCATGGAGAAGGGTCTATGTGTAGAA2060.10672524466503297No Hit
CATAGAAAGGCAATGTTCAAGTGGTTTTGAGGTAAAACTATTAGCGAGAC1950.101026323833405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)