FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93040
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA2171623.340498710232158No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA54845.894239036973345No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA32743.5189165950128976No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA17451.875537403267412No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC16641.7884780739466897No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA16601.7841788478073946No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA16431.7659071367153913No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT16251.7465606190885643No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT14581.5670679277730009No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCACCCTGCTTATCAAACAT12311.3230868443680137No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG11981.2876182287188307No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT11851.2736457437661222No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT10871.1683147033533963No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT7190.7727858985382631No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT6810.7319432502149613No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT6010.6459587274290628No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTATGCAAGACTAGGCAATTT5490.5900687876182287No Hit
CATAGAGGTGAGCGGCTGTCTCCATCACTTATACGCCTCCCTGTCTATGT5180.556749785038693No Hit
CATAGAGGTGAGCGGCTGTCTCCAACACTGAACATAGCCTTTGGGGTTTC5120.5503009458297506No Hit
CATAGAGGTGAGCGGCTGTCTCCAAACTGGACAATGAGAGGATCTATGTG4780.5137575236457438No Hit
CATAGAGGTGAGCGGCTGTCTCCAGTGTATGCAAGACTAGGCAATTTACA4730.508383490971625No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG4610.4954858125537403No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG4240.45571797076526227No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC4230.4546431642304385No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG4010.43099742046431644No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTTAGGTCA3960.42562338779019776No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA3840.41272570937231295No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCAGCTTCCACATGATGGAC3710.3987532244196045No Hit
CATAGAGGTGAGCGGCTGTCTCCAGTGTTAAGGCTGGCAAAGTTCCAATC3580.384780739466896No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG3430.36865864144453997No Hit
CATAGATGGAGAGAGTGAGGGAAAGGACATCACTTATACGCCTCCCTGTC3400.3654342218400688No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATTCTATGAGCCATGCTGAAGTCC3290.35361134995700777No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAATTAGCCAGGCA3160.33963886500429924No Hit
CATAGAGGTGAGCGGCTGTCTCCAGCTGTGGCTGAAAGGGGTCAACGTAC3020.324591573516767No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCAC2980.3202923473774721No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT2950.31706792777300086No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA2870.308469475494411No Hit
CATAGAGGTGAGCGGCTGTCTCCATCTATGAGACCAACTCAGATGGGATC2820.3030954428202923No Hit
CATAGATGAAAAGTCAAGCCAGCACATGTCGTCAGTGTCCAAACTGGACA2810.3020206362854686No Hit
CATAGACTGTCATTGCTTGCCCATTGGAAGTTAGGAAGCCAGCTCTATGT2800.3009458297506449No Hit
CATAGAGGTGAGCGGCTGTCTCCATGTGAAGAACGATGTGTTTGCTTCCC2770.29772141014617365No Hit
CATAGAGGTGAGCGGCTGTCTCCAACACTGACGCCATGCTGAAGTCCCAT2720.292347377472055No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT2610.280524505588994No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATGCCATGCTGAAGTCCCATGATC2560.2751504729148753No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG2280.24505588993981084No Hit
CATAGAGGTGAGCGGCTGTCTCCAACCCCTTAAGAAAATTTAATTGTCTA2200.23645743766122096No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA2180.2343078245915735No Hit
CATAGACCAGACTTTTGAAAGAAGCACATGGAAGTACACAAAAAGGGCAT2090.22463456577815993No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCAC2070.22248495270851248No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCCCTTAAGAAAATTTAATTG2060.22141014617368873No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT2010.21603611349957008No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGAACCATGACTGGGGACTGTGA2000.21496130696474636No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCAC2000.21496130696474636No Hit
CATAGATGAAAAGTCAAGCCAGCACAGGAGAAAGATGTAGGCTGGGGAGC1970.21173688736027516No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA1820.1956147893379192No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGTACCACAGGCATGTGCCAC1800.1934651762682717No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA1740.18701633705932932No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1710.18379191745485812No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTCCACATGATGGACATCTA1670.1794926913155632No Hit
CATAGAAAGGCCTTCCTGTATCAGTCATCACTTATACGCCTCCCTGTCTA1630.17519346517626827No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAAATTAGCCAGGC1570.16874462596732587No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT1550.16659501289767842No Hit
CATAGACCCTTACCAATAACACAATCAACACCAACTCAGATGGGATCCTC1550.16659501289767842No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT1520.16337059329320722No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCATAAATTCAACAGGCTTT1440.15477214101461736No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG1440.15477214101461736No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACACCAC1410.15154772141014616No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG1390.14939810834049871No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAACTACAGGTGCCCACCAC1390.14939810834049871No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCAC1390.14939810834049871No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCAC1370.14724849527085124No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCAC1350.1450988822012038No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCGCCAC1340.14402407566638006No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCAC1310.14079965606190886No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA1300.13972484952708514No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATTGGAAGTACA1190.12790197764402408No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGTGTGCCAC1170.1257523645743766No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA1130.12145313843508168No Hit
CATAGATGAAAAGTCAAGCCAGCACAACACTGCTCATTATTATTGGATGG1120.12037833190025796No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG1120.12037833190025796No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAATTAGCCATGCT1110.11930352536543422No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGTGCCAC1100.11822871883061048No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCTGCCAC1080.11607910576096302No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAATTAGCCAGGCAT1070.1150042992261393No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCATAGCCTTCAGGTCA1060.11392949269131557No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATTCTATGAACCATGTCGTCAGTG1060.11392949269131557No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGTGTGTGCCAC1050.11285468615649184No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA1040.1117798796216681No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTGCTCATTATTATTGGATGG1040.1117798796216681No Hit
CATAGAATCCTTTCCCCATTGCTTGTGTAGAACCATTCGTCCCATGCTGA1030.11070507308684437No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCATACGGGAGCAGGAATTA1030.11070507308684437No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA990.10640584694754944No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA990.10640584694754944No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAACACAAAAATTAGCCAGGCA960.10318142734307824No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAATAGAGCAGGAATTAGACTCT960.10318142734307824No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA950.1021066208082545No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGTGCCAC940.10103181427343078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)