FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55206
Sequences flagged as poor quality0
Sequence length150
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCACCCAGCCCATATTGCACATCTACAAGGACACTCATCTATGA38717.011918994312212No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGTGCAGCAACAAAAGTCACTCCTCT24204.383581494765062No Hit
CATAGAGTCTGGAGGAAGGTGTCAGCCTCCAGACTCAACCCTTCTATGAG22724.115494692605877No Hit
CATAGAAGTGACCCTCAGCTCAGTGAAACAAGATCGTGCCTCTATGAGAC22724.115494692605877No Hit
CATAGAGGATCCCCTGACATTTTGGTTGCCTTTCCTCAGTTCTTTTTCTA19923.608303445277687No Hit
CATAGATCATGGGACTTCAGCATGGCTCACACCTATAATCCCATCTATGA17833.229721407093432No Hit
CATAGATCGGTAAGGAATTTGGCTAGAGGACACTTTGGACTCTGCCTCTA16583.003296743107633No Hit
CATAGATGCCTCAAAGAGCTGAAGACAGCCGCTCACCTCTATGAGACCAA13852.508785276962649No Hit
CATAGATGCCTCAAAGAGCTGGAGACAGCCGCTCACCTCTATGAGACCAA13582.4598775495417167No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAACAGCTAAAAATCTTGGAG13562.4562547549179437No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCTAACTTCATAGCACATCAT12992.3530051081404197No Hit
CATAGAATACAACACACTCTCTGCCCTGTTCACTCTGATGGTACTTCTAT10711.9400065210303228No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAATTTGCAAATACAGAATCA9501.7208274462920699No Hit
CATAGATCACTTGACTACAGAAAAAGGTCTACACTGACGACATGGCTCAC9251.6755425134949102No Hit
CATAGATGCTTCTGATATGTTGCCGTACACTGACGACATGGTTCTACACA8111.4690432199398615No Hit
CATAGAAGGAGCTGGACTGGATGGACTACAAGTACCCACCACCTCTATGA7211.3060174618700866No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGTGTCAGCCTCCAGACTCAACCCTT6681.210013404340108No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCTATGAGACCAAGTCTCTGC6561.1882766365974713No Hit
CATAGAACAGTAAGTCAGCTCCTCCTTGGAGAGAAATGCTGCTCTATGAG6161.1158207441220158No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGCTTTGCTGTTTCTATGAGACCAAG5741.0397420570227875No Hit
CATAGAGGCAGGTGGGTGGTGGAGGGCTTTGCTGTTTCTATGAGACCAAG5120.9274354236858313No Hit
CATAGATCACCCAGCCCATATTGCACAACTGGCATCTGGTGATCTATGAG4670.8459225446509437No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGACTGACGACATGGTTCTACA4530.8205629822845343No Hit
CATAGATGTGCCACATACCTTTCCCAGGACACTTTGGACTCTGCCTCTAT4470.8096945984132159No Hit
CATAGACTCTGTTTTGCTACCTGGGGACACGGACTACAAGTACCCACCAC4350.7879578306705792No Hit
CATAGACTCTGTTTTGCTACCTGGGGGAGACCAAAGCTAGAAACTCCCAT4000.7245589247545556No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAACATTAGCTTAGTTAATTA3400.6158750860413723No Hit
CATAGATCACTTGACTACAGAAAAAGGTCTACACTGGAGACAGCCGCTCA3350.6068180994819403No Hit
CATAGAGAACAGCCCTGAGAGAATGCCTCTTGTAGAAGGGATGGTCTATG3170.5742129478679854No Hit
CATAGAAGAGTGTGCTGTGTCTTCCGTAACTCTCAGTTGTGTGTGTGGTC3010.5452305908778031No Hit
CATAGAATACAACACACTCTCTGCCCTGCACATCTACAAGGACACTCATC2960.5361736043183711No Hit
CATAGACTCTGTTTTGCTACCTGGGGTCATTCTTCTCTGGGGGCTCTATG2770.5017570553925298No Hit
CATAGAAGGTAGGGTACTATTGATTAGAAAAGTACACTGACGACATGGCT2750.498134260768757No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCTGGGGGCTCTATGAGACCA2720.4927000688330978No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGGTGGGGAAAGAGAGCACTCTATGA2700.48907727420932506No Hit
CATAGAGCAGCCATAGATAATTAATACACTTCTACAAGGACACTTTGGAC2570.465529109154802No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCGACCACACGCACAACTGGC2550.4619063145310292No Hit
CATAGAGCTTTAAGACCTGTCAGTGACCCTCAGCACAGTGAAACAAGATC2500.4528493279715973No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCCAAAGTGCCTCTTGTAGAA2460.4456037387240517No Hit
CATAGATCACCCAGCCCATATTGCACATCTACAAGGACACTTTGGACTCT2460.4456037387240517No Hit
CATAGACTCTGTTTTGCTACCTGGGGTGGGGAAAGAGAGCACTCTATGAG2430.4401695467883926No Hit
CATAGACTAATAGCCTCCCAAAGATTCCTTGGAGAGAAATGCTGCTCTAT2390.43292395754084706No Hit
CATAGATCACTTGACTACAGAAAAAGGTCTGCTGAGATTGGCCTGTGTCT2270.41118718979821034No Hit
CATAGACCCCATGTGCAGTGTAAGCTACACTGACGACATGGCTCACACCT2240.4057529978625512No Hit
CATAGACTCTGTTTTGCTACCTGGGGGCGGTCATTCTTCTCTGGGGGCTC2220.40213020323877846No Hit
CATAGAACAGTAAGTCAGCTCCTCCTCTAACTTCATAGCACATCATGTCT2220.40213020323877846No Hit
CATAGACAGCTGGGGTGGGAGGTTAGGGTGGGGAAAGAGAGCACTCTATG2190.3966960113031192No Hit
CATAGACGGGCCAGAGAATAGTGCTAGGGTGGGGAAAGAGAGCACTCTAT2110.3822048328080281No Hit
CATAGATGGAAATTTTTGGCCAGGTGCAAATTGTCAGTGTGTCTATGAGA2110.3822048328080281No Hit
CATAGACTAATAGCCTCCCAAAGATTCCTTAGGGTGGGGAAAGAGAGCAC2090.37858203818425534No Hit
CATAGAAGTGACCCTCAGCTCAGTGAGGGTGGGGAAAGAGAGCACTCTAT2080.37677064087236894No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCACACTGACGACATGTGTGA2070.37495924356048255No Hit
CATAGAGCCTCCACTCTTCTCGCTATCACACTGACGACATGGTTCTGCAC2040.3695250516248234No Hit
CATAGACTAATAGCCTCCCAAAGATTCCTACACTGACGACATGGCTCACA2020.3659022570010506No Hit
CATAGATTTGTGTGAGAAGGAGCAAGACCAAAGCTAGAAACTCCCATCTA2000.3622794623772778No Hit
CATAGATCGGTAAGGAATTTGGCTAGAGGCAGAGGACAGGTATCTATGAG1870.33873129732275475No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGGTAATGGAGGAGTATGGGATCTAT1860.33691990001086836No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAAAACTGGTGGAGGGCTTTG1720.31156033764445895No Hit
CATAGAGCAGCCATAGATAATTAATACACTTCTGCTGAGATTGGCCTGTG1710.30974894033257255No Hit
CATAGATGCCTCAAAGAGCTGAAGACACACTGACGACATGGCTCACACCT1690.30612614570879976No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCTACGGAGATAGAGAGGTTG1620.293446364525595No Hit
CATAGATCCCCATCTTTCCAATGTTTCCTACACTGACGACATGGCTCACA1610.29163496721370863No Hit
CATAGACTAATAGCCTCCCAAAGATTCCTAGGGTAATGGAGGAGTATGGG1600.28982356990182223No Hit
CATAGAACAGTAAGTCAGCTCCTCCTCGAGGCAGAGGACAGGTATCTATG1530.27714378871861756No Hit
CATAGATGTGCCACATACCTTTCCCACACTGACGACAGTGAAACAAGATC1520.27533239140673116No Hit
CATAGAGCAGCCATAGATAATTAATACACTTCTCGACATGGCTCACACCT1510.27352099409484476No Hit
CATAGATCACTTGACTACAGAAAAAGGTCTCATAGATGGGAGTTTCTAGC1460.2644640075354128No Hit
CATAGACCCCATGTGCAGTGTAAGCTGAGAAAGGAGGATCACTCTATGAG1450.26265261022352643No Hit
CATAGAGAACAGCCCTGAGAGAATGGAGACAGCCGCTCACCTCTATGAGA1440.26084121291164003No Hit
CATAGATGATCCATCTACCTCTGCTTCAGGACACTTTGGACTCTGCCTCT1400.2535956236640945No Hit
CATAGATGCTTCTGATATGTTGCCGTAGGGTAATGGAGGAGTATGGGATC1400.2535956236640945No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCAGGGCGGCTGAGAAAGGAG1290.2336702532333442No Hit
CATAGATCGGTAAGGAATTTGGCTAGAGGCCAGTGCCTCTTGTAGAAGGG1250.22642466398579866No Hit
CATAGACCACCGTGCCCAGATAAGTTGCCTTTCCTCAGTTCTTTTTCTAT1230.22280186936202584No Hit
CATAGATTTGTGTGAGAAGGAGCAAGATCGTGCCTCTTGTAGAAGGGATG1210.21917907473825307No Hit
CATAGACTAATAGCCTCCCAAAGATTCCTTCTATAGGACACTTTGGACTC1190.2155562801144803No Hit
CATAGATCCCCATCTTTCCAATGTTTCCTAGAACAGCTAAAAATCTTGGA1180.2137448828025939No Hit
CATAGAGAACAGCCCTGAGAGAATGCCGACATGGTTCTACACATAGAGAA1130.204687896243162No Hit
CATAGACCAGCAGTTCTACTCCTAGATATACAGTTTCAATACTATGCCTC1120.2028764989312756No Hit
CATAGATCACTTGACTACAGAAAAAGGTCTATGTAGGGTGGGGAAAGAGA1040.18838532043618447No Hit
CATAGACCAGCAGTTCTACTCCTAGATATACACTGACGACATGGCTCACA1040.18838532043618447No Hit
CATAGAGGCATAGTATTGAAACTGTAGATCACACTGACGACATGGCTCAC1030.18657392312429807No Hit
CATAGAATACAACACACTCTCTGCCCTGCCTCTTGTAGAAGGGATGGTCT990.1793283338767525No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCTATGAGACCAAGTCACAGT990.1793283338767525No Hit
CATAGACTCTGTTTTGCTACCTGGGGTGGAGACAGCCGCTCACCTCTATG950.17208274462920697No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCTGGGTCATTCTTCTCTGGG940.17027134731732058No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCTGGGGGCTCTATGGTCATT940.17027134731732058No Hit
CATAGACTCTGTTTTGCTACCTGGGGCTGAGAAAGGAGGATCACTCTATG900.16302575806977504No Hit
CATAGAAGTGACCCTCAGCACAGTGAAACAAGATCGTGCCTCTATGAGAC890.16121436075788864No Hit
CATAGAGCCTCCACTCTTCTCGCTATCGTAGGAGAGGAGGGGGCAGAATA890.16121436075788864No Hit
CATAGAACAGTAAGTCAGCTCCTCCTACACATAGAACAGCTAAAAATCTT870.15759156613411585No Hit
CATAGACCTGTGTGTGAGGCATTGTTCTCATAGATCTCCCTAATTAACTT870.15759156613411585No Hit
CATAGACCCTCCTATCCCTTTTCCCCACACTGACGACATGGCTCACACCT860.15578016882222948No Hit
CATAGAGAACAGCCCTGAGAGAATGCTCAGATCTCAAAAGGCTTCTATGA840.15215737419845668No Hit
CATAGACCCCATGTGCAGTGTAAGCTACACTGACGACATGGTTCTACACA790.14310038763902475No Hit
CATAGAGAACAGCCCTGAGAGAATGCTGCTCTATGAGATCCTTGGAGAGA790.14310038763902475No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGCACTGACGACATGGTTCTACACAT770.13947759301525198No Hit
CATAGATGTGCCACATACCTTTCCCATCTATGAGACCAAAGCTAGAAACT760.13766619570336558No Hit
CATAGAATACAACACACTCTCTGCCCTGTGCCTCTTGTAGAAGGGATGGT760.13766619570336558No Hit
CATAGAGCAGCCATAGATAATTAATACACTTCTACACTGACGACATGGTT760.13766619570336558No Hit
CATAGAAGTGACCCTCAGCTCAGTGAAACAAGATCGTGCCTCTTGTAGAA740.13404340107959278No Hit
CATAGATGATCCATCTACCTCTGCTTCACACTGACGACATGGTTCTACAC740.13404340107959278No Hit
CATAGACCCTCCTATCCCTTTTCCCCACTGACGACATGGCTCACACCTAT730.1322320037677064No Hit
CATAGATGGAAATTTTTGGCCAGGCGCAAATTGTCAGTGTGTCTATGAGA700.12679781183204725No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCTCGAGGCAGAGGACAGGTA690.12498641452016086No Hit
CATAGATCACTTGACTACAGAAAAAGGTCTCTGCTACCGTAGGCTGAGAA690.12498641452016086No Hit
CATAGAACAGTAAGTCAGCTCCTCCTACACTGACGACATGGCTCACACCT670.12136361989638807No Hit
CATAGAGCTTTAAGACCTGTCAGTGACCTCGAGGCAGAGGACAGGTATCT670.12136361989638807No Hit
CATAGAGCCTCCACTCTTCTCGCTATCACACTGACGACATGGTTCTACAC660.11955222258450168No Hit
CATAGATCGGTAAGGAATTTGGCTCGAGGCAGAGGACAGGTATCTATGAG630.11411803064884252No Hit
CATAGAATACAACACACTCTCTGCCCTGCACTGACGACATGGCTCACACC630.11411803064884252No Hit
CATAGACCCTCCTATCCCTTTTCCCCACACGGACTACAAGTACCCACCAC630.11411803064884252No Hit
CATAGATGCCTCAAAGAGCTGAAGACACACTGACGACATGGTTCTACACA630.11411803064884252No Hit
CATAGATGCTTCTGATATGTTGCCGTTGCCTTTCCTCAGTTCTTTTTCTA620.11230663333695613No Hit
CATAGAACATCTACAGAACTCTCTACCCACACTGACGACATGGTTCTACA620.11230663333695613No Hit
CATAGATGCTCAGATCTCAAAAGGCTTCTATGAGACCAAGTCTCTGCTAC610.11049523602506973No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC610.11049523602506973No Hit
CATAGAATACAACACACTCTCTGCCCTGCTGAGATTGGCCTGTGTCTATG600.10868383871318335No Hit
CATAGATGTGGTCTCAGTGCCCTATGAGACCAAGTCTCTGCTACCGTAAG580.10506104408941057No Hit
CATAGAGGCAGGTGGGTAGTGGAGGGCTTTGCTGTTTCTATGAGACCAAG560.1014382494656378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)