FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91797
Sequences flagged as poor quality0
Sequence length150
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA2124023.13801104611262No Hit
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT86489.420787171694064No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG63106.873862980271686No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG50855.539396712310859No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG44464.843295532533743No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC33223.618854646666013No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG25232.748455831889931No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG21272.3170691852674925No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT20352.2168480451430876No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA17341.8889506193012842No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT12801.394381079991721No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC12241.3333769077420832No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG9691.0555900519624823No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT9401.02399860561892No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA8260.8998115406821574No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA7460.8126627231826747No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGTAAAGGCTGGGGTCTT7210.7854287177140866No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT5510.6002374805276861No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACGAATGAGGAAACAGGCACTC5360.5838970772465331No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT4860.5294290663093565No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC4580.49892698018453757No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGTGTAGAACCATG4060.44228024880987393No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACCATGGAGAGAATAATCCGTC3650.39761647984138915No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGGGCTGGTGTTTTCCTT3580.38999095831018443No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTTGGGCTGGTGTTTTCCT3550.38672287765395386No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACCCTGGGAGAAGAAAT3490.38018671634149265No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT3450.3758292754665185No Hit
CATAGATTCTTTCCTGGCTGTGGGTGTAGCCCGTTCTCTCTGTTGTGTCT3380.3682037539353138No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT3220.3507739904354173No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT3180.34641654956044315No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT3150.3431484689042126No Hit
CATAGACCCTCTCTTACCCTTCCACCAACATGCTTTTAGTCACGTCTATG2700.29412725906075365No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC2550.27778685577960066No Hit
CATAGATTCAGAGAAGGACAGCGTGGTGCTGGAATAGTTGGACTCTATGT2470.2690719740296524No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGATGGGAGTGTCTGC2290.24946349009226879No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACAGTTGTGGAAAGTGC2290.24946349009226879No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT2260.2461954094360382No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTAGCAGGCCCTTCAGCATCA2170.23639116746734645No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGAGACCATGGAGAGAATAA2170.23639116746734645No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG1990.21678268352996283No Hit
CATAGATCTAGCCCATCACTTCAGCAGATGCCTGGCCAACTGTTTTTTCT1820.19826355981132282No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTGTTACAAAAATTGGGA1790.19499547915509222No Hit
CATAGATCTAGCCCATCACTTCAGCATCATGGGTCCTAAATGTCTTTGTC1770.19281675871760515No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGTGGGTTGAGGGAGTCTTCTCTATG1760.1917273984988616No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC1720.1873699576238875No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTGGGCTGGTGTTTTCCT1580.17211891456147804No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACTCTATGTGTAGAACCATGTC1380.1503317101866074No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGTCGTCAGTGTACCCTGGG1370.1492423499678639No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCCATGTCGTCAGTGTACA1370.1492423499678639No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA1330.14488490909288976No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTGCATAAAAACTGTCGGAG1260.13725938756168501No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCAGGCCCTTCAGCATCATTTCT1210.13181258646796737No Hit
CATAGATGGCCCAGAATCCTTTGTAGAACACAGTTGTGGAAAGTGCAATG1150.12527642515550616No Hit
CATAGATCTCACCGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT1080.11765090362430144No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTGACTGTTAATATAGAA1030.11220410253058377No Hit
CATAGAACAACTTGCTCTAATACTTGGGAGAAGAAATGTTGGTCTATGTG1020.11111474231184025No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGAGTCACACAGTCCCTACTCCTTTG1010.11002538209309673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)