FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22648
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA777834.342988343341574No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA8573.783998587071706No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG6402.82585658777817No Hit
CATAGACCCCATGACTCAGCTCCTCATTCTAAAAAAGAACGATGAAATAC6392.821441186859767No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG5482.4196397032850583No Hit
CATAGAGCAACCCCAGCAGTTTGAGAGGCCGAAGAGGGCCAATTGCTTGA5112.2562698693041328No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC4812.123807841752031No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG4742.0929000353232072No Hit
CATAGATTCAGAGAAGGACAGCGTGGTCACATAGGTTGCTAGACAGATTT4672.0619922288943835No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG4431.956022606852702No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA3901.7220063581773224No Hit
CATAGAGCAACAATGAAGGTGCACAAACACTTCTCTACTTACTGGCATAG2601.1480042387848817No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT2060.9095725891910985No Hit
CATAGAGCTAATAAAGACATACCTGAGCCAGGTGCGATGGCTTTCTGACT2000.8830801836806783No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG1980.8742493818438715No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT1890.834510773578241No Hit
CATAGACCCTCTCTTACCCTTCCACCAACATGCTTTTAGTCACGTCTATG1560.688802543270929No Hit
CATAGAAGTATTCACACTGGGGCCCAGCCACGGTCAGTTCCCACAGCCAC1550.6843871423525256No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA1510.666725538678912No Hit
CATAGATGGTATTTGAGTGGGGAAACAGATCCAAACCATATCATACCCCA1460.6446485340868952No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG1410.6225715294948782No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT1310.5784175203108443No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGTGTAGAACCATG1190.5254327092900035No Hit
CATAGAGCAGCTTGAATTCTCCTCAGAAAATGGGATTTTCTTTTCTATTG1190.5254327092900035No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA1170.5166019074531968No Hit
CATAGAACAACTTGCTCTAATACTTGGGAGAGGAAATGATTTCCCTTGAA1140.5033557046979865No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT1130.49894030377958315No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT1130.49894030377958315No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCTAGGATTTGAGCTCATG1060.46803249735075947No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT880.3885552808194984No Hit
CATAGATGGTATTTGAGTGGGGAAACAGGCCCTTCAGCATCATTTCTATG830.36647827622748147No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT820.36206287530907805No Hit
CATAGATTCCTCCAAAGACTGCAGGGGTCAGTCTTCAGCCCACCCATGCC810.3576474743906747No Hit
CATAGATTCCTCCAAAGACTGCAGGGTCCTAAATGTCTTTGTCCTTCTAT810.3576474743906747No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT790.3488166725538679No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACGAATGAGGAAACAGGCAC750.3311550688802543No Hit
CATAGATGACATGGGAAATTATGCTGCTTTTCATAACAGTGAGGAGCAGA710.3134934652066408No Hit
CATAGATTCCTCCAAAGACTGCAGGGTAGATGCCTGGCCAACTGTTTTTT660.29141646061462384No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGGCAACTTGCTTGTCTCAATCTCCT640.282585658777817No Hit
CATAGACCCTCTCTTACCCTTCCACCTTCTGTCATGAAATGATGCAGCAA630.2781702578594136No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT610.2693394560226069No Hit
CATAGAGGCTGCAGTGAACAATGATCGATCCGCTGCACTCCAGGGAAACT590.26050865418580005No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA530.23401624867537973No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGTACATTTAACATTTCTACCT530.23401624867537973No Hit
CATAGATCTAGCCCATCACTTCAGCATAAACATATTTCCCCTTTGGGATT500.22077004592016958No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAATGCTATGAAATAGCTTCAGAT500.22077004592016958No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT490.21635464500176618No Hit
CATAGACCCTCTCTTACCCTTCCACCCTGGGAGAAGAAATGTTGGTCTAT490.21635464500176618No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG480.2119392440833628No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGTGCTCGTATCTTGG460.20310844224655597No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCAGGCCCTTCAGCATCATTTCT450.19869304132815258No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA450.19869304132815258No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA440.1942776404097492No Hit
CATAGATGGCAAATGGTGGGATCTCTCATAGATGGCAAATGATGGGAGTG430.1898622394913458No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG430.1898622394913458No Hit
CATAGAACATTGATTCCTGGCATGTCCCATGATTTACCATCACAAATTTT410.18103143765453902No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCCCACAGTGGCCTTTCCCAG410.18103143765453902No Hit
CATAGAACACCTGAACTACATAGCGGATACATAACTTCTGGTAGCACTGG370.16336983398092547No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA370.16336983398092547No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA360.15895443306252208No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG360.15895443306252208No Hit
CATAGACCAGTACGCCTTACCCCTTGTCAGACCCAGGCTACACATCTATG350.15453903214411868No Hit
CATAGACCAGTACGCCTTACCCCTTGTTATAGAAAACAAGGAGAACATCT340.15012363122571531No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA330.14570823030731192No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGGTGGGTTGAGGGAGTC320.1412928293889085No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGTGCAGAGCCTTCAGGTCA320.1412928293889085No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA310.13687742847050513No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGTAAAGGCTGGGGTCTTGGGTCTAT290.12804662663369834No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAAAGCCTTCAGGTCA250.11038502296008479No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACGAATGAGGAAACAGGCACTC250.11038502296008479No Hit
CATAGACCCTCTCTTACCCTTCCACCATTCAGACTCTATGTGTAGAACCA250.11038502296008479No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAATGCTATAAAATAGCTTCAGAT240.1059696220416814No Hit
CATAGAGGTGAGCGGCTGTCTCCACACTGTCATTGTGGGTTTTAACTACT240.1059696220416814No Hit
CATAGATCTAGCCCATCACTTCAGCATCATGCAGGCCCTTCAGCATCATT240.1059696220416814No Hit
CATAGATGCCACCACACCCAGTTAATTTTTGTATTTTTGTAGAGACGGGG230.10155422112327799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)