FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15950
Sequences flagged as poor quality0
Sequence length150
%GC38

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA11597.266457680250784No Hit
CATAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA11487.197492163009405No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT10866.808777429467085No Hit
CATAGATGCCCTTTTTGTGTACTTCCACTGACGACATGGTTCTACACATA8775.498432601880878No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG7084.438871473354232No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT5743.5987460815047023No Hit
CATAGATGCCCTTTTTGTGTACTTCCAACACTGACTGATACAGGAAGGCC4412.7648902821316614No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGGCCTTCCTGTATCAGTCAGGC3892.438871473354232No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGAGAC3632.2758620689655173No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAGTCTATGAGACC3532.2131661442006267No Hit
CATAGAGCCAAGGAAAGTTGAATGGAGACAGCCGCTCACCTCTATGAGAC3392.1253918495297808No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA2951.8495297805642634No Hit
CATAGATCCCATCCAATAATAATGAACAAGCAATGGGGAAAGGATTCTAT2931.836990595611285No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATGATCTGTTATTCAAAGGT2791.749216300940439No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGCACAGATCATTTAAGCTCAA2731.7115987460815048No Hit
CATAGACCTTTGGGTTCATATCATCTGGAGACAGCCGCTCACCTCTATGA2641.6551724137931034No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTTCCTTCTGCTGGCTATTCTATG2401.5047021943573669No Hit
CATAGATGCCCTTTTTGTGTACTTCCATAAATGACCTTCTCTTCTGTCTC2151.3479623824451412No Hit
CATAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT2061.2915360501567397No Hit
CATAGACAGGGAGGCGTATAAGTGATGGTTCTACACAAAGTCACGAAAGT2051.2852664576802508No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTGTTATTCAAAGGTTTTCTGC1911.1974921630094044No Hit
CATAGATGCCCTTTTTGTGTACTTCCATGTGCTTCTTTCAAAAGTCTGGT1721.078369905956113No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAATGGGCAAGCAA1651.0344827586206897No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTATCCCCAGAAATGTTAG1540.9655172413793104No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGTTGATTGTGTTATTGGTAAGG1450.9090909090909091No Hit
CATAGACAGGGAGGCGTATAAGTGATGACACTGGAGACAGCCGCTCACCT1410.8840125391849529No Hit
CATAGATGCCCTTTTTGTGTACTTCCATAGATGCCCTTTTTGTGTGCTTC1390.8714733542319749No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGTCATAGAATCCTTTCCCTCA1290.8087774294670845No Hit
CATAGATGTATACAAGCTGTCACAGACAACAACACTGACTGATACAGGAA1270.7962382445141065No Hit
CATAGACCTTTGGGTTCATATCATCTGGCTACACATGGCTATGCAATCTA1190.7460815047021944No Hit
CATAGAAACCCCAAAGGCTATGTTCAAAATGGTCAAACAGGAGGTCTATG1180.7398119122257053No Hit
CATAGATGCCCTTTTTGTGTACTTCCACATAGATGCCCTTTTTGTGTGCT1100.6896551724137931No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTACCTGATTGGCCAT910.5705329153605015No Hit
CATAGAGCTGGCTTCCTAACTTCCAACAATGGGCAAGCAATGACAGTCTA870.5454545454545455No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGACACTGACTGATACAGGAAG660.41379310344827586No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGCTGATGCATCTGTGAGTTGC660.41379310344827586No Hit
CATAGAACTTCACAAGGGCTTTAGGGCTACACATGGCTATGCAATCTATG640.4012539184952978No Hit
CATAGATGTATACAAGCTGTCACAGACAACAATGGGCAAGCAATGACAGT630.3949843260188088No Hit
CATAGAGAGATTTTGGGCTGAGACGACACTGACGACATGGTTCTACCATT620.3887147335423198No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTATACGTGAATGTGGATCAGAA600.3761755485893417No Hit
CATAGATCCCATCCAATAATAATGAGCAATGGGCAAGCAATGACAGTCTA600.3761755485893417No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGTATCCCCAGAAATG560.3510971786833856No Hit
CATAGATCCCATCCAATAATAATGAGCACAAAGTCACGAAAGTGGGTCTA560.3510971786833856No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTCTCTGCTACCGTAT560.3510971786833856No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAGTCTACAATGGG550.3448275862068966No Hit
CATAGATCCCATCCAATAATAATGAGCAGAATTACCTCTGGATGGTCTAT550.3448275862068966No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATATCCCCAGAAATGTTAGCA530.3322884012539185No Hit
CATAGATCATGGGACTTCAGCATGGCTACACATGGCTATGCAATCTATGA520.32601880877742945No Hit
CATAGATCATGGGACTTCAGCATGGCACACTGACGACATGGTTCTACACA520.32601880877742945No Hit
CATAGACAGGGAGGCGTATAAGTGATGGAGACAGCCGCTCACCTCTATGA470.2946708463949843No Hit
CATAGACAGGGAGGCGTATAAGTGATGACACTGACGACATGGTTCTACAC460.2884012539184953No Hit
CATAGATGCCCTTTTTGTGTGCTTCTTTCAAAAGTCTGGTCTATGAGACC450.28213166144200624No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC450.28213166144200624No Hit
CATAGATGCCCTTTTTGTGTACTTCCATACGGTAGCAGAATTACCTCTGG450.28213166144200624No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTACCATGTTTTCATCCTG440.27586206896551724No Hit
CATAGAGCTGGCTTCCTAACTTCCAACACTGACGACATGGTTCTACACAA440.27586206896551724No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAGTCTATGAGACA420.2633228840125392No Hit
CATAGACACCATGCCTGGCTAATTTTTACGGTAGCAGAATTACCTCTGGA400.25078369905956116No Hit
CAAAGTCACGAAAGTGGGTCTATGAGACCAAGTCTCTGCTACCGTATGCG320.2006269592476489No Hit
CATAGATGTCCATCATGTGGAAGCTGTCACAGACAAGCAATGGGGAAAGG290.18181818181818182No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCCTATGAGACCAAGTCTCTGCT280.1755485893416928No Hit
CATAGATGTCCATCATGTGGAAGCTGCTTCCTTCTGCTGGCTATTCTATG270.16927899686520376No Hit
CATAGAGGATCCCATCTGAGTTGGTCTCATAGAATCCTTTCCCTCACTCT260.16300940438871472No Hit
CATAGATTTGTAAATTGCCTAGTCTTGCACAGATCATTTAAGCTCAATCT250.1567398119122257No Hit
CATAGAGCTGGCTTCCTAACTTCCAAACAATGGGCAAGCAATGACAGTCT230.14420062695924765No Hit
CATAGATGTATACAAGCAATGGGGAAAGGATTCTATGAGACCAAGTCTCT230.14420062695924765No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATATCCCCAGAAA220.13793103448275862No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATGAGACCAAGTCTCTGCTA220.13793103448275862No Hit
CATAGAGCTGGCTTCCTAACTTCCAACACTGACTGATACAGGAAGGCCTT210.1316614420062696No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACATAGATGCCCTTTTTGTGTG190.11912225705329155No Hit
CATAGATTTGTAAATTGCCTAGTCTTGCATACACTGACGACATGCTTCCT180.11285266457680251No Hit
CATAGACAGGGAGGCGTATAAGTGATGTACGGTAGCAGAATTACCTCTGG160.10031347962382445No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCCCTTGTGCTGGCTTGACTTTT160.10031347962382445No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCCCTTCTGCTGGCTATTCTATG160.10031347962382445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)