FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33164
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG1545446.59872150524665No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA10583.190206247738512No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA10243.0876854420455917No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG8622.599203956096973No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG6071.8302979134000723No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC5131.5468580388372934No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA5041.5197201785068146No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG4341.3086479314919792No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC3941.1880352189120733No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC2820.8503196236883368No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG2800.8442889880593415No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAGTTTTTCCAAATATAAG2620.7900132673983838No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAAGTTTTTCCAAATATAA1630.4914968037631166No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA1580.47642021469062834No Hit
CATAGAGGAAGTGCCTACCTTAAATTGATGGCTACACATAGATTAAGTGC1460.44023640091665667No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG1420.428175129658666No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC1300.3919913158846942No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT1240.37389940899770835No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCAGGGATTATCAGTAGTGCT1140.34374623085273187No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGCTAGTC1140.34374623085273187No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1050.31660837052225305No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG950.28645519237727657No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG930.28042455674828126No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGACGCCGTGGCTCACACCTGTAAT900.2713786033047883No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTACAGTTTTTCCAAATATA890.26836328549029065No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA880.26534796767579305No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGACGCCATGGGTCCTTTTC860.25931733204679774No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTT800.24122542515981185No Hit
CATAGAGGGGCATGCTGGATAAATCTACACTGACGGAGTGAGGGCAGTAA780.23519478953081654No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGAGGGAA760.22916415390182127No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA750.2261488360873236No Hit
CATAGATCACCTACACAGACAGCTTTCCCTAGGAAGCAAGGGGGCAGATT750.2261488360873236No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGA730.22011820045832833No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGAGAAGTAAGGTGACTCTCCCCAG730.22011820045832833No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG720.21710288264383065No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA710.214087564829333No Hit
CATAGACCCTTCTCCATGCCACATCAGGGATTATCAGTAGTGCTCACATC700.21107224701483537No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG690.20805692920033772No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAATGGCATTAAATGACTTGCCCAA670.20202629357134244No Hit
CATAGAGCTTCTGATCACTTTCGCCCCATAGATCATGGGACTTCAGCATG670.20202629357134244No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA660.19901097575684476No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG650.1959956579423471No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAAGCATGTT640.19298034012784948No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA630.18996502231335183No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG620.18694970449885417No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG600.1809190688698589No Hit
CATAGAAGATGGTCTGCTACACTGGTACACATAGAAGATGGTCTGCCACA590.17790375105536124No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT580.1748884332408636No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT580.1748884332408636No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA570.17187311542636594No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTGGCTAGTCCGTCACCCCTAAT550.16584247979737063No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG530.15981184416837535No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGAGCGATGGTTTATGCCTGTAAT530.15981184416837535No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGTGGAGGTTGCAGTGAGCCAAGA510.15378120853938004No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTAAGAGGTCG510.15378120853938004No Hit
CATAGACCCTTCTCCATGCCACATCATCCACGGTTCTATACTGTTGACCC510.15378120853938004No Hit
CATAGAAGATCCCATAGCAGCTTTGCACTTCAGCATGTTGAGATGAATAA510.15378120853938004No Hit
CATAGAGGGGCATGCTGGATAAATCTTAGGTAGAGGAGTTTCAAACATCT500.15076589072488242No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG480.1447352550958871No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTAGCATGTTGAGATGAATAATT480.1447352550958871No Hit
CATAGAAGGAGGGGAAACTGAGGCCATGGGTCCTTTTCACATCATCTATG460.13870461946689183No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG460.13870461946689183No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGAGGGAAGGAAGGGCAAACTCT460.13870461946689183No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT450.13568930165239415No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG440.13267398383789653No Hit
CATAGAGGAAGTGCCTACCTTAAATTGATGGTACGGGGGCAGATTAACAG440.13267398383789653No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAGGAGGGAAGGAAGGGCA430.12965866602339887No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATTCTTATAGCCAGTGT420.12664334820890122No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTGCCATGTCTTCTGTGTTTG420.12664334820890122No Hit
CATAGATCACCCAGGTAATCACTAGGTGTCAGTCCTGGCATATACAAGGT410.12362803039440357No Hit
CATAGATCATGCAAAGAACACAGGCCGGGCGCAGTGGCTCACACCTGTAA390.11759739476540827No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT370.11156675913641298No Hit
CATAGAGGGGCATGCTGGATAAATCTATAGTGCAGCTATATTGGAGGAAA370.11156675913641298No Hit
CATAGATCATGGGACTTCAGCATGGCAGTGTTTGCAGATTTGGACCTGCG370.11156675913641298No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC360.10855144132191533No Hit
CATAGATCACCTACACAGACAGCTTTCCCATGGGTCCTTTTCACATCATC340.10252080569292003No Hit
CATAGAACACAGATCTGCTTGGAGGTTCACGCCTGTAATCCCAGCACTTT340.10252080569292003No Hit
CATAGATGTGGCTATGCAGACTGAGTCTCTGCTACCGTACCATGGGTCCT340.10252080569292003No Hit
CATAGAAGATGGTCTGCTACACTGGTGTTCCACACTCATGCAAAGCTGGT340.10252080569292003No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG340.10252080569292003No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG340.10252080569292003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)