FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109645
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3505431.970450088923343No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG43263.9454603493091343No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG28782.624834693784486No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA25642.3384559259428155No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA24982.2782616626385153No Hit
CNTAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG22782.077614118290848No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA18971.7301290528523872No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC18071.6480459665283416No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG16611.5148889598248894No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT14231.297824798212413No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA13761.254959186465411No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC13351.2175657804733457No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG10010.912946326781887No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC7410.6758174107346436No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA6420.5855260157781933No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGCTAGTC5140.4687856263395504No Hit
CATAGAACACAGATCTGCTTGGAGGTGTTGTCAGAGATAGCACAGTGGAT4230.3857905057230152No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTTCCCCTCTCTCTGAATAACTC4140.3775821970906106No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG4030.36754981987322727No Hit
CATAGATCAACAATGGATGAGCAAAAGGCTAGTCCGTCACCCCTAATCTA4020.36663778558073784No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA4020.36663778558073784No Hit
CATAGATGTGCCTCTCCAACATTCATGTACGGTGTCAGAGATAGCACAGT3760.3429248939760135No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT3700.3374526882210771No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT3700.3374526882210771No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC3670.33471658534360893No Hit
CATAGAAGGAGGGGAAACTGAGGCCATGGGTCCTTTTCACATCATCTATG3420.31191572803137396No Hit
CATAGATCACCTACACAGACAGCTTTCCTACGGGGGCAGATTAACAGGTC3380.3082675908614164No Hit
CATAGACCCTTCTCCATGCCACATCAGGGATTATCAGTAGTGCTCACATC3350.3055314879839482No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG3240.2954991107665648No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGCCATGTCTTCTGTGTTTG3050.27817045920926625No Hit
CATAGACACCTGGATCCTGTGTTGTCTTAGGTAGAGGAGTTTCAAACATC2950.2690501162843723No Hit
CATAGAGAGGTCGCCCAGGTATTTCTTATAGCCAGTGTCTCCCCTCTATG2910.26540197911441465No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG2690.24533722467964797No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA2530.23074467599981757No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC2520.2298326417073282No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCGGAGGGAAGGAAGGGCAAACT2500.2280085731223494No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGACGGAGTGAGGGCAGTAA2480.22618450453737057No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCCGACATGGTTCTACACATAG2480.22618450453737057No Hit
CATAGACCATTTGCCGCGTTCTGAAGGGATTATCAGTAGTGCTCACATCT2390.217976195904966No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG2380.21706416161247663No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGAGGGAAGGAAGGGCAAACTCT2210.20155957864015686No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTAGTGCAGCTATATTGGAGGAA2170.1979114414701993No Hit
CATAGACACCTGGATCCTGTGTTGTCTTACGGGGGCAGATTAACAGGTCA2140.1951753385927311No Hit
CATAGAGGTCGCAGCTACCCAGAAAGTGCAGCTATATTGGAGGAAAAGTC2080.1897031328377947No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTAAAGTACAC2000.18240685849787952No Hit
CATAGATCAACAATGGATGAGCAAAAGGACACTGAGCAGAGTTGGGTGTG1990.18149482420539012No Hit
CATAGATTAAATGCTGCTATGAGAGAGGTACACTGACGCCATGGGTCCTT1970.17967075562041132No Hit
CATAGAGGAAGTGCCTACCTTAAATTGATGGAGGGAAGGAAGGGCAAACT1950.17784668703543252No Hit
CATAGATCACCCAGGTAATCACTAGGTATTCACCAAGTCACCCAGCCTCT1920.17511058415796435No Hit
CATAGATCAACAATGGATGAGCAAAAGGCAGATCATGAGGTCAGGTCTAT1900.17328651557298555No Hit
CNTAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG1880.17146244698800675No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA1850.16872634411053855No Hit
CATAGAGGGGCATGCTGGATAAATCTCTGCTACCGTAGACGGAGTGAGGG1830.16690227552555978No Hit
CATAGACCCTTCTCCATGCCACATCATGAGCATGTTGAGATGAATAATTG1790.16325413835560218No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT1780.16234210406311278No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTACGGGGGCAGATTAACAGGTC1780.16234210406311278No Hit
CATAGACCATTTGCCGCGTTCTGAAGGCAGATCATGAGGTCAGGTCTATG1710.15595786401568698No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCCACACTCATGCAAAGCTGGT1680.15322176113821878No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG1680.15322176113821878No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGA1680.15322176113821878No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCATTCACCAAGTCACCCAGC1680.15322176113821878No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA1670.15230972684572938No Hit
CATAGATCACCTACACAGACAGCTTTCCACACTGAGCAGAGTTGGGTGTG1600.14592548679830364No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGCTTTGGACCTGCG1570.14318938392083544No Hit
CNTAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG1550.1413653153358566No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTACCACACTCATGCAAAGC1500.13680514387340964No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1470.13406904099594147No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTAAAACCACTTGAACATTGCCT1430.13042090382598387No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA1420.12950886953349447No Hit
CNTAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA1410.12859683524100504No Hit
CATAGAGCTTCTGATCACTTTCGCCCACACTCATGCAAAGCTGGTCTATG1400.12768480094851567No Hit
CATAGATCACCTACACAGACAGCTTTCCACACTCATGCAAAGCTGGTCTA1390.12677276665602627No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1380.12586073236353687No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG1380.12586073236353687No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCTCTCCAGAACCCACCATCTATGA1370.12494869807104748No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCCGATTTGGACCTGCG1350.12312462948606867No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGTGTGGAGGGAAGGAAGGGCAAAC1350.12312462948606867No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGCGCGGTGGCTCATGCCTGTAAT1280.11674038943864289No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1220.1112681836837065No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCTTTCTTCTTCTGCAGAAATTGTGA1200.10944411509872772No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGCCCTGCG1200.10944411509872772No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCAGTGCAGCTATATTGGAGGA1200.10944411509872772No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG1200.10944411509872772No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGAGGGAAGGAAGGGCAAACTCTA1190.10853208080623832No Hit
CNTAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA1190.10853208080623832No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1190.10853208080623832No Hit
CATAGATGTGGCTATGCAGACTGAGTCTCTGCTACCGTACCATGGGTCCT1180.10762004651374892No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1170.10670801222125953No Hit
CATAGAGCTTCTGATCACTTTCGCCCTACGGTGTCAGAGATAGCACAGTG1170.10670801222125953No Hit
CATAGAAGATGGTCTGCTACACTGGTTTCCACACTCATGCAAAGCTGGTC1160.10579597792877013No Hit
CATAGAGGTCGCAGCTACCCAGAAAGGCAGATCATGAGGTCAGGTCTATG1150.10488394363628072No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTTAGTGCAGCTATATTGGAGGA1150.10488394363628072No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCCAAGA1140.10397190934379133No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGAGTGCAGCTATATTGGAGGAAA1120.10214784075881253No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCTTCTTATAGCCAGTGTCTCCCC1110.10123580646632313No Hit
CNTAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA1110.10123580646632313No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCTCTTAGGTAGAGGAGTTTCA1110.10123580646632313No Hit
CATAGAAGGAGGGGAAACTGAGGCCACACTCATGCAAAGCTGGTCTATGA1100.10032377217383374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)