FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences322662
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG7623223.625961532501503No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG194136.016512635513323No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG134124.156671687400438No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA122023.7816662637682774No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC109623.3973631850047417No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG89802.7830981026585095No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC87892.7239030316554165No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG56911.7637651784220019No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG52451.625540038802214No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA50931.5784319194699095No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA42841.3277051527604737No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC42171.3069403896337344No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGACGCCATGGGTCCTTTTC38511.193508997030949No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT36571.1333841605147181No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA29910.926976216598174No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGGGAGGGAAGGAAGGGC29660.9192281706553608No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA23080.7152996014405167No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT21710.6728403096739002No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT19510.6046575053771439No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA19340.599388834136031No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCAGTGCAGCTATATTGGAGGA19280.5975293031097557No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA18830.5835828204126919No Hit
CATAGAACTTTGTGCCCCCAGTGTCTGCTACCGTAGGCTAGTCCGTCACC18300.5671569630139279No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAGTTTTTCCAAATATAAG17900.5547600895054268No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTTCTTAGGTAGAGGAGTTTCAA17490.542053294159213No Hit
CATAGACCCTTCTCCATGCCACATCATCTATAGCATGTTGAGATGAATAA15620.48409791050697015No Hit
CATAGAGGGGCATGCTGGATAAATCTTAGGTAGAGGAGTTTCAAACATCT15470.47944908294128225No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTTCTTATAGCCAGTGTCTCC14890.46147361635395556No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA14890.46147361635395556No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC14730.45651486695055504No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA14300.4431882279289164No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA14300.4431882279289164No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG13710.4249028395038771No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT13220.40971666945596324No Hit
CATAGAAGGAGGGGAAACTGAGGCCACACTCATGCAAAGCTGGTCTATGA11800.3657077685007841No Hit
CATAGACCCTTCTCCATGCCACATCATCCCATGGGTCCTTTTCACATCAT11730.3635383156367964No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG10800.3347155847295312No Hit
CATAGACCCTTCTCCATGCCACATCAGGGATTATCAGTAGTGCTCACATC10600.32851714797528064No Hit
CATAGATGTGCCTCTCCAACATTCATCTGCTTGGAGGGAAGGAAGGGCAA10310.3195294146816173No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC10050.3114714469010915No Hit
CATAGAAGGAGGGGAAACTGAGGCCATGGGTCCTTTTCACATCATCTATG9690.30031426074344053No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGCATGTTG9250.28667769988408925No Hit
CATAGACCATTTGCCGCGTTCTGAAGATAGTTTTTCCAAATATAAGATCC8990.2786197321035635No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGAGGGATTATCAGTAGTGCTCAC8620.2671526241081999No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA8580.2659129367573498No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATAGCATGTTGAGATGA8150.25258629773571106No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGAGGGAAGGAAGGGCAAACTCT7810.24204895525348508No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGCTCTGCTACCGTAGGGATTATC7750.2401894242272099No Hit
CATAGATTAAATGCTGCTATGAGAGAGGTAGATTAAGTGCAGCTATATTG7650.23709020585008458No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGGAGGGAAGGAAGGGCAAACTC7480.23182153460897162No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCTTCTTATAGCCAGTGTCTCCC7350.22779255071870874No Hit
CATAGATGTGGCTATGCAGACTGAGTCCTAGCATGTTGAGATGAATAATT7220.22376356682844586No Hit
CATAGATGTGGCTATGCAGACTGAGTAGACTGAGCAGAGTTGGGTGTGTC7140.22128419212674566No Hit
CATAGATCTAGTACTGTAATTGTAGTGTGCACACTGACGCCATGGGTCCT6960.2157055990479201No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGAGGGAA6900.21384606802164496No Hit
CATAGATGTGCCTCTCCAACATTCACCAAGTCACCCAGCCTCTATGAGAC6800.21074684964451965No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTATTGCACTC6680.20702778759196933No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTTCCCCTCTCTCTGAATAACTC6620.20516825656569415No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG6420.19896981981144357No Hit
CATAGAGGAAGTGCCTACCTTAAATTGATGGAGGGAAGGAAGGGCAAACT6420.19896981981144357No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATTCTTATAGCCAGTGT5640.1747959164698663No Hit
CATAGAGCTTCTGATCACTTTCGCCCCTCATAGAAAACCACTTGAACATT5400.1673577923647656No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT5130.15898990274652733No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG5100.15806013723338974No Hit
CATAGACCCTTCTCCATGCCACATCATGCAAAGCTGGTCTATGAGACCAA4440.13760529594436283No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCTACCGTAGACGGAGTGAGGGCAGT4360.1351259212426626No Hit
CATAGAAGATCCCATAGCAGCTTTGCCATGTCTTCTGTGTTTGGTCTATG4140.12830764081298698No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGGCTAGTCCGTCACCCCTAATC4140.12830764081298698No Hit
CATAGATGTGGCTATGCAGACTGAGTGGGGGCAGATTAACAGGTCATCTA4070.12613818794899925No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGACGCCGTGGCTCACACCTGTAAT4020.12458857876043662No Hit
CATAGATTAAATGCTGCTATGAGAGAGGTCAGGTAGGCAGATCATGAGGT3910.1211794385455988No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCTTCTTATAGCCAGTGTCTCCCC3760.11653061097991087No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCAGCACCCTGAAGTTTGAGA3760.11653061097991087No Hit
CATAGAACTTTGTGCCCCCAGTGTCTACACTGGAGACAGCCGCTCACCTC3600.1115718615765104No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG3570.11064209606337283No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATAA3540.10971233055023523No Hit
CATAGATCATGGGACTTCAGCATGGCATGTTGAGATGAATAATTGAGACT3380.10475358114683476No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGCG3380.10475358114683476No Hit
CATAGAGCTTCTGATCACTTTCGCCCTGGAGACAGCCGCTCACCTCTATG3250.10072459725657189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)