FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33205
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG1642749.47146514079205No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA7752.333985845505195No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA7022.1141394368318025No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG6631.9966872458967024No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG5421.6322842945339557No Hit
CATAGAAGATCCCATAGCAGCTTTGCACACTGACGACATGGTTCTACACA4671.40641469658184No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAAGTTTTTCCAAATATAA4601.3853335341063093No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC4021.2106610450233397No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA4021.2106610450233397No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC3771.1353711790393013No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG2760.8312001204637857No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC2430.7318174973648547No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG2360.7107363348893239No Hit
CATAGAACACAGATCTGCTTGGAGGTACACTGACGACATAGTTTTTCCAA1760.5300406565276314No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG1230.37042614064146967No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGAGGGAA1200.36139135672338507No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAATGGCATTAAATGACTTGCCCAA1200.36139135672338507No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG1000.30115946393615417No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT930.2800783014606234No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC920.27706670682126183No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA860.25899713898509263No Hit
CATAGACCCTTCTCCATGCCACATCAGGGATTATCAGTAGTGCTCACATC840.25297394970636955No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGACGCCGTGGCTCACACCTGTAAT820.24695076042764644No Hit
CATAGATTAAATGCTGCTATGAGAGAGGTACACTGACGACATGGTTCTAC810.2439391657882849No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTTCCCCTCTCTCTGAATAACTC750.2258695979521156No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG740.2228580033127541No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG740.2228580033127541No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG730.21984640867339253No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT730.21984640867339253No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA720.21683481403403101No Hit
CATAGAAGATGGTCTGCTACACTGGTATATGCCATGTCTTCTGTGTTTGG710.2138232193946695No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA710.2138232193946695No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAGTTTTTCCAAATATAAG690.20780003011594642No Hit
CATAGAAGATCCCATAGCAGCTTTGCCTCGCTAATAGTTTTTCCAAATAT650.19575365155850025No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT640.19274205691913868No Hit
CATAGAGAGGTCGCCCAGGTATTTCTTAGACACCTTGTATATGCCATGTC630.18973046227977716No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGA620.18671886764041562No Hit
CATAGAAGATCCCATAGCAGCTTTGCCAATAGTTTTTCCAAATATAAGAT620.18671886764041562No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGCATGTTGAGATG620.18671886764041562No Hit
CATAGAACCAGAGTAATGAGGGATGCTCCGACATGGTTCTACACATAGAA620.18671886764041562No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG620.18671886764041562No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG620.18671886764041562No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG600.18069567836169254No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA600.18069567836169254No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGGGAGGGAAGGAAGGGC580.17467248908296942No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG560.16864929980424634No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTAGGAAAGCAATCACCGCCAGT510.15359132660743863No Hit
CATAGATCATGGGACTTCAGCATGGTGGTGTTTGCAGATTTGGACCTGCG510.15359132660743863No Hit
CATAGAAGATCCCATAGCAGCTTTGCTAATAGTTTTTCCAAATATAAGAT500.15057973196807709No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTAGGCTAGTCCGTCACCCCTAA490.14756813732871554No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG480.144556542689354No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA480.144556542689354No Hit
CATAGACTCAAGCAATCCTCCCACCTACACTGACGACATGGTTCTACACA470.14154494804999246No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG460.13853335341063092No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA460.13853335341063092No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA460.13853335341063092No Hit
CATAGAACCAGAGTAATGAGGGATGCTCACATCTATGAGACCAAGTCTCT450.1355217587712694No Hit
CATAGACCCTTCTCCATGCCACATCAGTGTAGCATGTTGAGATGAATAAT450.1355217587712694No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG440.13251016413190786No Hit
CATAGAAGGAGGGGAAACTGAGGCCACACTCATGCAAAGCTGGTCTATGA440.13251016413190786No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGAGCAGAGTTGGGTGTGTC420.12648697485318477No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTT400.12046378557446168No Hit
CATAGATCATGGGACTTCAGCATGGCAGTGTTTGCAGATTTGGACCTGCG400.12046378557446168No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCCTCCAGAGTAGATGGGACC390.11745219093510013No Hit
CATAGATCACCTACACAGACAGCTTTCCCACTAGAGGAAAGCAATCACCG390.11745219093510013No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGCGCGGTGGCTCATGCCTGTAAT370.11142900165637705No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCAGGAAAGCAATCACCGCCA350.10540581237765397No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCCTTGTAATCATTTCCCCTCT350.10540581237765397No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGGTTGCAGATTTGGACCTGCG350.10540581237765397No Hit
CATAGATGTGCCTCTCCAACATTCATGAAAACCACTTGAACATTGCCTTT350.10540581237765397No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA350.10540581237765397No Hit
TAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCGAG340.10239421773829242No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCAAGAATGAGGAGAGTACTACTTTC340.10239421773829242No Hit
CATAGACCATTTGCCGCGTTCTGAAGTACGGGGGCAGATTAACAGGTCAT340.10239421773829242No Hit
CATAGATGTGGCTATGCAGACTGAGTCTCTGCTACCGTAGCATGTTGAGA340.10239421773829242No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)