FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122179
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA3146325.751561233927273No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA87747.181266829815271No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA42533.480958266150484No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC35002.8646494078360436No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCCCTTAAGAAAATTTAATTG21971.7981813568616538No Hit
CATAGAGGTGAGCGGCTGTCTCCAAACTGGACAATGAGAGGATCTATGTG21681.7744456903395835No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT20691.693417035660793No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT19771.618117679797674No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT19081.5616431629003347No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA17601.440509416511839No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG16811.3758501870206827No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA16431.3447482791641772No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA15871.2989138886388003No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT14691.2023342800317567No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT10620.8692164774633939No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG7470.6113980307581499No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC5160.4223311698409711No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCAC4940.404324802134573No Hit
CATAGACCCACTTTCGTGACTTTGTGGAAGTACACAAAAAGGGCATCTAT4460.3650381816842502No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT4430.362582767906105No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG4040.3306623887902176No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG3980.32575156123392723No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT3970.32493308997454556No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCAC3840.3142929636025831No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAATTAGCCAGGCA3770.308563664786911No Hit
CATAGAGGTGAGCGGCTGTCTCCACACTGACGCCATGCTGAAGTCCCATG3590.29383118211803994No Hit
CATAGATGAAAAGTCAAGCCAGCACAGACTGCTGAGGAGCTCCTCTTACA3490.2856464695242227No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCAC3410.2790986994491688No Hit
CATAGAAAGAGACAGAAGAGAAGGTCATTTATGAGCCATGCTGAAGTCCC3300.27009551559596984No Hit
CATAGACCATCCAGAGGTAATTCTGCTCTATGGAAGTACACAAAAAGGGC3280.26845857307720644No Hit
CATAGATATGCCCATGGTTAGGAAGGCCATGCTGAAGTCCCATGATCTAT3220.26354774552091603No Hit
CATAGAGGTGAGCGGCTGTCTCCAACCCCTTAAGAAAATTTAATTGTCTA3030.24799679159266322No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGCCCGCGCAGAGCCTTCAGGTCA2900.23735666522070076No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA2880.2357197227019373No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG2800.2291719526268835No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT2800.2291719526268835No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCAC2730.22344265381121142No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA2690.22016876877368452No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG2610.2136209986986307No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG2480.20298087232666823No Hit
CATAGACCCACTTTCGTGACTTTGTGGATGCCATGCTGAAGTCCCATGAT2410.19725157351099618No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCAC2200.18006367706397988No Hit
CATAGACCTCCTGTTTGACCATTTTGAACACTGACGCCATGCTGAAGTCC2150.17597132076707125No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA2090.1710604932107809No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCTGCCAC2050.167786608173254No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTGCCATGCTGAAGTCCCATG1970.16123883809820017No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG1910.1563280105419098No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA1880.15387259676376464No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCAGCAGAAGAACATGGACAGTGTG1870.1530541255043829No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA1860.15223565424500118No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCACCAC1830.149780240466856No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGTACCACAGGCATGTGCCAC1800.14732482668871083No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCGCCAC1770.14486941291056565No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT1760.1440509416511839No Hit
CATAGAGGTGAGCGGCTGTCTCCAATAGCCATGCTGAAGTCCCATGATCT1740.14241399913242048No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA1710.13995858535427527No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT1700.13914011409489355No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGTGCCAC1670.1366847003167484No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCGCCAC1660.13586622905736664No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCAC1660.13586622905736664No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA1640.13422928653860322No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1630.13341081527922147No Hit
CATAGAGGTGAGCGGCTGTCTCCACACCCTGGTCCTCACTTGGGGTACTG1620.13259234401983974No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA1530.12522610268540418No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG1510.12358916016664075No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCCACCAC1380.11294903379467829No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA1340.1096751487571514No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACACCAC1340.1096751487571514No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACGTGCCAC1340.1096751487571514No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA1340.1096751487571514No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA1320.10803820623838795No Hit
CATAGAGGTGAGCGGCTGTCTCCACGCCGGACAAATTTTTGTAGTTTTAG1290.10558279246024277No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGTGCCAC1290.10558279246024277No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCAC1260.10312737868209759No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA1240.10149043616333411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)