FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71372
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1369919.1938014907807No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA71119.96329092641372No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT32194.510172056268565No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT27093.795606120047077No Hit
CATAGATGGAGAGAGTGAGGGAAAGGAAATTATGGGAGCCCTGTGAAACG26113.6582973715182425No Hit
CATAGATGACTTGGGGGAAAATGGTAGAAACAGCCAGTTTTCCCTTCTAT20052.8092249061256513No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG18932.6523006220926972No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA13771.9293280277980158No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT12571.7611948663341366No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA12441.7429804405088831No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA9211.2904220142352743No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG9151.2820153561620804No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC8061.129294401165723No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG7181.005996749425545No Hit
CATAGAATAGCCAGCAGAAGGAAGCAACCCAAATGGACATTTCACTTATA7141.0003923107100825No Hit
CATAGACTTCCTTGCCCCCATTTATTGCTGAAACATTTTTCTGCATGCAA7130.9989912010312167No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT6940.9723701171327691No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT6770.9485512525920529No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC5860.8210502718152777No Hit
CATAGATTTGGGGACCTGGGTCAATAAAAGATGCTTACTTTGAAGGATAC5000.7005548394328308No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT4480.6276971361318164No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTGGAAGTACACAAAAAGGGC3990.559042761867399No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG3930.550636103794205No Hit
CATAGACATGCTAACATTTCTGGGGATAGCAGAGACTTGGTCTCATAGAC3830.5366250070055484No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA3590.5029983747127725No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGAACCACAGGCATGTGCCAC3350.4693717424199966No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG3220.45115731659474306No Hit
CATAGATTGAGCTTAAATGATCTGTGCAAGGTTAAACAATATCCAAATCC2940.4119262455865045No Hit
CATAGAGGTGAGCGGCTGTCTCCATCACTTATACGCCTCCCTGTCTATGT2780.38950849072465393No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA2770.3881073810457883No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG2710.3797007229725943No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT2700.37829961329372863No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG2690.37689850361486293No Hit
CATAGAGCAGAAAACCTTTGAATAACAGATAGAGCAGGAATTAGACTCTT2450.3432718713220871No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG2350.32926077453343044No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTTGGAAGTACACAAAAAGGG2280.31945300678137084No Hit
CATAGAGTTCAAATGGCCAATCAGGTATGTTTCTCTCTATCTGATTTCTT2200.30824412935044554No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCACC2100.29423303256178895No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT2090.2928319228829233No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCGCCAG1990.27882082609426667No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG1840.2578041809112817No Hit
CATAGAGCAGAAAACCTTTGAATAACAGACATAGAGCAGGAATTAGACTC1760.24659530348035644No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCTG1720.24099086476489381No Hit
CATAGACTGTCATTGCTTGCCCATTGCAGAGACTTGGTCTCATAGACTGT1660.23258420669169982No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTTGTA1660.23258420669169982No Hit
CATAGACATGCTAACATTTCTGGGGATAAGGCTGGCAAAGTTCCAATCTA1650.23118309701283418No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCCAGATGATATGAACCCAA1550.21717200022417757No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT1460.2045620131143866No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT1410.1975564647200583No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT1400.1961553550411926No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1190.1667320517850137No Hit
CATAGAAGTTCTGATCCACATTCACGTATATTGGAACTTTGCCCCAAAAG1140.15972650339068542No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCGCCAC1120.1569242840329541No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACATTCCTAGGTATT1090.1527209549963571No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGAAGTCAAATTGTCC1060.14851762595976015No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA1000.14011096788656616No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA990.1387098582077005No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCATGATTGT980.13730874852883485No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTCTATGTGTAGAACCATGTC950.13310541949223786No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACGCCAC920.12890209045564086No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA910.1275009807767752No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCCTGTGCTAC900.12609987109790954No Hit
CATAGACTGTCATTGCTTGCCCATTGTCATTGCTTGCTCATTATTATTGG900.12609987109790954No Hit
CATAGATGAAAAGTCAAGCCAGCACAGTGAAACCCTGTCTCTACGAAAAA890.12469876141904389No Hit
CATAGACATGCTAACATTTCTGGGGATAACATTACTGGGGACTGTGACTC890.12469876141904389No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTCCACATGATGGACATCTA880.12329765174017822No Hit
CATAGACCCTTACCAATAACACAATCAACACTACGGTAGCAGAGACTTCG870.12189654206131255No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCAC850.11909432270358124No Hit
CATAGAATCCTTTCCCCATTGCTTGTACACTGGGGACTGTGACTCTGTTT840.11769321302471558No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCACAGAGCCTTCAGGTCA820.11489099366698424No Hit
CATAGATGGAGAGAGTGAGGGAAAGGTGGGTGGATCACGAGGTCAGCAGA790.11068766463038728No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG770.10788544527265594No Hit
CATAGACATGCTAACATTTCTGGGGATAGACATGCTAACATTACTGGGGA760.10648433559379028No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA730.1022810065571933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)