FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46960
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG2128145.31729131175469No Hit
CATAGAGAATTTGCACACCACGGGACATGGATGAAGCTGGATCTATGAGA17623.7521294718909712No Hit
CATAGATGTCTCCCAGGCTAGAGTGAGCCCTTGTCCCTTTCTATGAGACC9131.9442078364565587No Hit
CATAGACCACACCCAAACACCACGTACACTGACGACATGGTTCTACACAT8021.7078364565587736No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGGGTGAGAAATGATGATGGCT6571.3990630323679727No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGGGAGAGGCTGTTTGAGATCT5391.14778534923339No Hit
CATAGATCATGGGACTTCAGCATGGTGGGTGCCTGATTGTTCTATGAGAC5141.094548551959114No Hit
CATAGAACCCAAAGAGTGAGCAGCAGAATCAGGGTTGGTTCTATGAGACC4570.973168654173765No Hit
CATAGAACAAGGCCAGAATTACCCTGGGTGAGAAATGATGATGGCTCTAT4320.9199318568994889No Hit
CATAGAACAAGGCCAGAATTACCCTGGGAGAGGCTGTTTGAGATCTATGA4300.9156729131175468No Hit
CATAGAGCTTCTTTCTGTTCATATTGGGCAACAGAACAACAACATCTATG4290.9135434412265757No Hit
CATAGAGAATTTGCACACCACGGGACCATGCTCACACCTTGATCTATGAG3360.7155025553662692No Hit
CATAGAGCTTCTTTCTGTTCATATTGGGGAACAGAACAACAACATCTATG3230.6878194207836457No Hit
CATAGACTTGATGCCCAGGAAACCTCCTGCCCCTGCAGGCTGAAAGTGCC2920.6218057921635435No Hit
CATAGAGGGTGTTTTTCGGTGTTACAACCAATGCTCTTTCATCTATGAGA2830.602640545144804No Hit
CATAGAGAAGAGAAGGCGACAATGGCATGAACTTGGGAGGCGGAGCTTGT2770.5898637137989778No Hit
CATAGAATCAAAATAGTACCCTTGCCTCTGGTTCTACACATAGAATTAGC2640.5621805792163543No Hit
CATAGAACAGACACAAATCTCAAAGCTTCTACACTGACGACATGGTGGGT2560.545144804088586No Hit
CATAGAACCCAAAGAGTGAGCAGCAGCACTGACGACATGGTTCTACACAT2540.540885860306644No Hit
CATAGAACTATGTCAAGAGAATTTTGCACACCACGGGACATGGATGAAGC2540.540885860306644No Hit
CATAGAGGGTGTTTTTCGGTGTCACAACCAATGCTCTTTCATCTATGAGA2050.436541737649063No Hit
CATAGACCTTCCTGTTGGCCACACAGAATTAGCGGAGAGTGAGAACTCTA2020.43015332197614997No Hit
CATAGACAGGAGGAGGAAGAAGAGGAGAGGCTGTTTGAGATCTATGAGAC1710.3641396933560477No Hit
CATAGAGGGCCAGAAGTTTGTTTACCTACACTGACGACATGGTGGGTGCC1690.3598807495741056No Hit
CATAGAGAAGAGAAGGCGACAATGGCGTAAACTCGGGAGGCGGAGATTGC1450.30877342419080067No Hit
CATAGAGGGTGTTTTTCGGTGTCACACACTGACGACATGGTTCTACACAT1440.30664395229982966No Hit
CATAGAACTATGTCAAGAGAATTTTGCACACCACGGGACCATGCTCACAC1380.2938671209540034No Hit
CATAGATCTTTGGTAGATATGGGGTCTCCCAGGCCTGAGATTGCTGCTAT1360.28960817717206133No Hit
CATAGACCACACCCAAACACCACGTACACTGATCTGAGCAAGGATAGCCC1350.2874787052810903No Hit
CATAGAACCCAAAGAGTGAGCAGCAGAGTGAGCCCTTGTCCCTTTCTATG1330.2832197614991482No Hit
CATAGATTCTCCCTTGTGCTTTTGGTACACTGACGACATGGTGGGTGCCT1200.2555366269165247No Hit
CATAGAACAATGTAATAAGCATCGGAGGACCATGCTCACACCTTGATCTA1170.24914821124361158No Hit
CATAGACCCTTAGAGTTTCAGCCTCCCATAGAATTAGCGGAGAGTGAGAA1160.24701873935264054No Hit
CATAGAATGCAGGAGAATATACACAGGTTACACTGACGACATGGTGGGTG1120.2385008517887564No Hit
CATAGATCTGTGGCTCCCGATAAATGTGCTCATACAGAATTAGATCTAGC1110.23637137989778534No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG1060.22572402044293013No Hit
CATAGAACAGACACAAATCTCAAAGCTTCTGGGTGAGAAATGATGATGGC1010.21507666098807499No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGGGCAACAGAACAACAACATC1010.21507666098807499No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG980.2086882453151618No Hit
CATAGATTAGTTCTTATTCTTGGTATGGCACCAAGTACTTCAGTTGACTA980.2086882453151618No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG970.2065587734241908No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG920.1959114139693356No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG890.18952299829642247No Hit
CATAGACAGGAGGAGGAAGAAGAGGAATTCTTGCCAGGGATCTATGAGAC870.18526405451448041No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGACACTGACGACATGGTGGGT870.18526405451448041No Hit
CATAGACAGCTGACCAGAAAATGTTTCAGACATGTTTCCTAGTTTCAGTT840.1788756388415673No Hit
CATAGAACAGACACAAATCTCAAAGCTTCTCTCAAAGCTGCTTTTCTCTT790.1682282793867121No Hit
CATAGATCATGGGACTTCAGCATGGTGGTGTTTGCAGATTTGGACCTGCG780.16609880749574105No Hit
CATAGAACCCAAAGAGTGAGCAGCAGCTGACGACATGGTTCTACACATAG770.16396933560477003No Hit
CATAGAACAGACACAAATCTCAAAGCTTCTGGCCTGGGCAACAGAACAAC750.15971039182282792No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG750.15971039182282792No Hit
CATAGAACAGACACAAATCTCAAAGCTTCTTTCTGTTCATATTGAGGAAT750.15971039182282792No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG750.15971039182282792No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG740.1575809199318569No Hit
CATAGAGGGTGTTTTTCGGTGTCACACTGACGACATGGTTCTACACATAG730.15545144804088587No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGTGCTCATACAGAATTAGATC720.15332197614991483No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG710.15119250425894376No Hit
CATAGATTCTCCCTTGTGCTTTTGGTCTTGTGCTCATACAGAATTAGATC710.15119250425894376No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGTGTGCTCATACAGAATTAGA680.14480408858603067No Hit
CATAGAATCAAAATAGTACCCTTGCCTCTGCAGGGACAGAGCACTGGGGA670.14267461669505963No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG630.1341567291311755No Hit
CATAGAACAAGGCCAGAATTACCCTGGGCAACAGAACAACAACATCTATG620.13202725724020442No Hit
CATAGACTTGATGCCCAGGAAACCTCACTTCAGTTGACTATAAGAAACAC610.12989778534923338No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG610.12989778534923338No Hit
CATAGAACAGACACAAATCTCAAAGCTTCTGCTACCGTACGTCCGCAGTT580.12350936967632027No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGTG570.12137989778534923No Hit
TAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCGAG550.11712095400340716No Hit
CATAGATCTTTGGTAGATATGGGGTCTCCAGCAGAATCAGGGTTGGTTCT550.11712095400340716No Hit
CATAGAACCCAAAGAGTGAGCAGCAGACGACATGGTTCTACACATAGAAC550.11712095400340716No Hit
CATAGATGTCTCCCAGGCTAGAGTGCGCCCTTGTCCCTTTCTATGAGACC550.11712095400340716No Hit
CATAGACAGCTCACAGACTGCATACTACACTGACGACATGGTGGGTGCCT540.11499148211243611No Hit
CATAGAGAAGAGAAGGCGACAATGGCTGCTTTTCTCTTCTTGGCATCTAT530.11286201022146507No Hit
CATAGATCATGGGACTTCAGCATGGCAGTGTTTGCAGATTTGGACCTGCG520.11073253833049404No Hit
CGTAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG510.108603066439523No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGACGACATGGTGGGTGCCTGA510.108603066439523No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTTGACCTGCG510.108603066439523No Hit
CATAGAACCCAAAGAGTGAGCAGCAGAGAGTGAGCCCTTGTCCCTTTCTA500.10647359454855196No Hit
CATAGAACCCAAAGAGTGAGCAGCAGAACCCAAAGAGTGAGCCCTTGTCC480.10221465076660989No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGATCTGCG480.10221465076660989No Hit
CATAGAGAATTTGCACACCACGGGACATGGATGAAGCTGGACCTATGAGA470.10008517887563884No Hit
CATAGATCATGGGACTTCAGCATGGCGATGTTTGCAGATTTGGACCTGCG470.10008517887563884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)