FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55171
Sequences flagged as poor quality0
Sequence length150
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1296723.503289771800404No Hit
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT44258.020518025774411No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG42767.750448605245509No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG35726.474415906907614No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG29505.34701201718294No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC15092.735132587772562No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG14832.688006380163492No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT11042.0010512769389717No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG10231.8542350147722535No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC9311.6874807416940056No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT7601.3775352993420455No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT7011.2705950589983868No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA5851.0603396712040747No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT5721.0367765673995397No Hit
CATAGACCCTCTCTTACCCTTCCACCAACATGCTTTTAGTCACGTCTATG4740.8591470156422759No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA4020.728643671494082No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT3850.6978303819035363No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA3590.6507041742944664No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT3130.5673270377553424No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG3020.5473890268438129No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACCCTGGGAGAAGAAAT2870.5202008301462725No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT2810.5093255514672563No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT2550.4621993438581864No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGTGCTCGTATCTTGG2060.3733845679795545No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT1790.3244458139239818No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCAGGCCCTTCAGCATCATTTCT1540.2791321527614145No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACGAATGAGGAAACAGGCACTC1510.2736945134219064No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACCCTGGGAGAAGAAATGTTGG1460.26463178118939296No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG1320.23925613093835532No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGATGTGCTCGTATCTTGGC1270.23019339870584185No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTGGGCTGGTGTTTTCCT1180.2138804806873176No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGTCGTCAGTGTGGGT1170.2120679342408149No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCCATGTCGTCAGTGTATG1130.20481774845480413No Hit
CATAGAATCTGGTTCAAGCACACAGTGTATGTGCTCGTATCTTGGCCATC1030.18669228398977725No Hit
CATAGACCCCATGACTCAGCTCCTCACTCTCCCACCATTCAGACTCTATG990.17944209820376647No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTAGCCCGTTCTCTCTGTT960.1740044588642584No Hit
CATAGAGGCTGCAGTGAACAATGATCGACACTGACGAATGAGGAAACAGG960.1740044588642584No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC940.17037936597125303No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT920.16675427307824764No Hit
CATAGACCCCATGACTCAGCTCCTCACACTGATGAGCATGCCTTTGATAA910.16494172663174494No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCAGCCCGTTCTCTCTGTTGTGT850.15406644795272878No Hit
CATAGATTCCTCCAAAGACTGCAGGGTCCTAAATGTCTTTGTCCTTCTAT850.15406644795272878No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTAAAGGCTGGGGTCTTGGGTCTAT820.14862880861322073No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGTGTAGAACCATG790.14319116927371264No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGGGGTCCTAAATGTCTTT760.13775352993420456No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGATGGGAGTGTCTGC710.12869079770169112No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACAGTTGTGGAAAGTGC710.12869079770169112No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCTGAGAAAAGATGCAGTACAGCT700.12687825125518842No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC690.12506570480868573No Hit
CATAGATGGGACAGCGACAATGACAGTGTGGTGGGTTGAGGGAGTCTTCT690.12506570480868573No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGTGGGTTGAGGGAGTCTTCTCTATG670.12144061191568034No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGGGCTGGTGTTTTCCTTGAT670.12144061191568034No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA670.12144061191568034No Hit
CATAGATTCCTCCAAAGACTGCAGGGACACTGACGAATGAGGAAACAGGC610.11056533323666419No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA610.11056533323666419No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC610.11056533323666419No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG610.11056533323666419No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGCTGGTGTTTTCCTTGATCTATG600.1087527867901615No Hit
CATAGATTCAGAGAAGGACAGCGTGGTGGGTTGAGGGAGTCTTCTCTATG590.1069402403436588No Hit
CATAGATCTCACCGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT570.10331514745065343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)