FastQCFastQC Report
Wed 8 May 2024
EGAF00005807709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115630
Total Bases17.3 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC43

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA3338528.872264983135864No Hit
CATAGATTGCACATAAAGTCTGATCCCATCTCAAGTCTCACTCTTCTATG63005.448413041598201No Hit
CATAGAGCCTGGCATTTGAGGTAAGGCTTGTGAGGGCTGAAGTCTATGTG48364.18230563002681No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGTGATTACAGGTG44423.841563608060192No Hit
CATAGACTACCACTACCCAGCACAGGAGCACCCTCTATGTGTAGAACCAT40923.53887399463807No Hit
CATAGACTGTTCTTTTAAATTAACACAGTCAGAGAGGCACTTGGTCCAGA19611.6959266626308052No Hit
CATAGAAGCAGCATTGATCATCCTCCACCCCATCCTACATGTGTCTATGT19251.6647928738216726No Hit
CATAGACTACCACCACCCAGTACAGGAGCACCCTCTATGTGTAGAACCAT17391.5039349649744875No Hit
CATAGAGATGTCAAGAGCAATGCCCAGCCACCCCATCCTACATGTGTCTA16001.383723947072559No Hit
CATAGACTACCACTACCCAGTACAGGAGCACCCTCTATGTGTAGAACCAT14131.2220012107584537No Hit
CATAGAGAATACAATGAACTGTGATGGCAGTGTAAGCTATATAGAAGTAC11901.0291446856352158No Hit
CATAGACTGTTCTTTTAAATTAACACAGTCAGAGACACTCTTGGTCTTTG10890.9417971114762604No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGGATTACAGGTG10300.89077229092796No Hit
CATAGACTGTTCTTTTAAATTAACACAGTCAGAGGCACTTGGTCCAGACT10060.8700164317218715No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTATTACTACAGGTG9830.8501253999827034No Hit
CATAGATCCCAGGCTTTAGAAAATATACCAAGGCTTGTGAGGGCTGAAGT9730.8414771253134998No Hit
CATAGAGATGTCAAGAGCAATGCCCAGCCACATTATTTTCTATGTGTAGA9490.8207212661074116No Hit
CATAGACTCAAGAAACTTACAATCATGGCAGAAGGTGTAAGGGAAGCCAC8720.7541295511545446No Hit
CATAGAGATGTCAAGAGCAATGCCCGGCCACATTATTTTCTATGTGTAGA8700.7523998962207039No Hit
CATAGAGAATACAATGAACTGTGATGGCAGTGTAAGGCTTGTGAGGGCTG7810.6754302516647929No Hit
CATAGACTGTTCTTTTAAATTAACACAGTCAGAGATGGGTTTTTGCCAGA6820.5898123324396782No Hit
CATAGATGACATAGACCTTATACCCTCATCAGTGTAGCATTTTAACACAG6450.5578137161636253No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAGAGTGCTGGAATTATAGGCG6110.5284095822883336No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGGATTACAGGCA5700.4929516561445991No Hit
CATAGATCCCAGGCTTTAGAAAATATACCAAGTCTAGGGATAGTTTGAGG5550.47997924414079396No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGGATTACAGGCG5290.45749373000086485No Hit
CATAGACCATCTGCGCATCCTGTCTGCTGTTTGTCTTCCATGCTTCTATG5100.44106200812937824No Hit
CATAGAAGCAGCATTGATCATCCTCCACCCAGTACAGGAGCACCCTCTAT5080.4393323531955375No Hit
CATAGACTCAAGAAACTTACAATCATGGCAGAAAGTGAAGGAGAGGCCAC4830.4177116665225288No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATGTCTCAGTGTACTCCTATG4810.4159820115886881No Hit
CATAGAACATCGCACACACATGGAACTCCTATGTAATGTCTTATTTTGTT4810.4159820115886881No Hit
CATAGAAGCAGCATTGATCATCCTCCAGCAGCATTTTAACACAGCATTGA4790.41425235665484733No Hit
CATAGATGACATAGACCTTATACCCTCATCAGTCTTTTGCAAGTTTGTCT3890.33641788463201594No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAACAGGTACTGGGATTACAGG3840.33209374729741414No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGGATTACAGGAG3830.3312289198304938No Hit
CATAGAGTTTTGTTCCCTTGCTGGCAGAGACTTGGTCTCATAGAGTTTTG3790.3277696099628124No Hit
CATAGACCATCTGCGCATCCTGTCTGCGGAGGCACTTGGTCCAGACTTTC3750.32431030009513107No Hit
CATAGAGGGACGGAGGCAAGAGGATAGGATGGGTTTTTGCCAGATAGCTC3740.32344547262821066No Hit
CATAGAGGGACGGAGGCAAGAGGATACATGCCTAGCCATTTTTGGTTCTA3740.32344547262821066No Hit
CATAGACTCAAGAAACTTACAATCATGGCAGGCTCGAGGCACTTGGTCCA3650.31566202542592753No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGAGATTACACACG3630.31393237049208683No Hit
CATAGACCATCCTCCCACCTTGACCTCTCAAAGTGCTAGGGTTACAGGCA3620.3130675430251665No Hit
CATAGAAGGTGATAATCATGACAGCCAACTGATAATGACTAAGAGAACAA3570.30874340569056474No Hit
CATAGAAGCAGCATTGATCATCCTCCAGCATTTTAACACAGCATTGAAGT3430.29663582115367987No Hit
CATAGATCCCAGGCTTTAGAAAATATACCACCACCCAGTACAGGAGCACC3380.2923116838190781No Hit
CATAGACCATCTGCGCATCCTGTCTGCTCTATGTGTAGAACCATGTCGTC3340.2888523739513967No Hit
CATAGACCATCCTCCCACCTTGACCTTCCAAAGTGCTAGGATAATAGGTG3150.27242065207991006No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATGTCGTCAGTGTGCTCTTTG2710.2343682435354147No Hit
CATAGAAGGTGATAATCATGACAGCCAACTGGTCTTCAACAAAGCAAACA2700.23350341606849434No Hit
CATAGAAGCAGCATTGATCATCCTCCAGAAGCAGCATTTTAACACAGCAT2500.21620686673008735No Hit
CATAGAGAATACAATGAACTGTGATGGCAGTGTAAAGTGGGGAAAGGACA2500.21620686673008735No Hit
CATAGATCCCAGGCTTTAGAAAATATACCACCCAGTACAGGAGCACCCTC2470.2136123843293263No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA2350.20323445472628213No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATGTCGTCAGTGTAAAGTGGG2340.20236962725936175No Hit
CATAGACTGTTCTTTTAAATTAACACAGTCAGAGACCAAGACTCCTATGT2300.19891031739168036No Hit
CATAGACCATCCTCCCACCTTGACCTCCATCTTGACCTCCCAAAGTGCTG2240.19372135259015827No Hit
CATAGAGGGACGGAGGCAAGAGGATAGTTTGAGGGTAATGCTCTTTGACT2210.19112687018939722No Hit
CATAGAAGGTGATAATCATGACAGCCACCCCATCCTACATGTGTCTATGT2140.18507307792095476No Hit
CATAGACTGTTCTTTTAAATTAACACAGTCAGAGACCAAGTGCTTCCCTG2120.18334342298711406No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGTTAGGATTACAGGCA2070.17901928565251232No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTTCTAGGATTACAGACA2060.17815445818559197No Hit
CATAGAGATGTCAAGAGCAATGCCCACCCCATCCTACATGTGTCTATGTG2040.17642480325175128No Hit
CATAGAGCCTGGCATTTGAGGTAAGGCACTTGGTCCAGACTTTCTATGTG1980.17123583845022916No Hit
CATAGACTACCACTACCCAGCACAGCATTTTAACACAGCATTGAAGTTCT1850.15999308138026463No Hit
CATAGAGAATACAATGAACTGTGATGGCATTGCTCTTTGACTTATGATGG1810.15653377151258324No Hit
CATAGACATGAGTGGCCGAACAGACCAAGTAGTCTTTTGCAAGTTTGTCT1790.15480411657874255No Hit
CATAGAGATGTCAAGAGCAATGCCCATGCTGAAGTCCCATGATCTATGTG1730.14961515177722046No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATGTCGTCAGTGTACTCCTAT1710.14788549684337976No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA1680.1452910144426187No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1670.14442618697569834No Hit
CATAGACCATCTGCGCATCCTGTCTGCTCTTTGACTTATGATGGAGTTCT1670.14442618697569834No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGGATTACAGGGG1660.143561359508778No Hit
CATAGACCATCTGCGCATCCTGTCTGGCTTCCCTGCTTGTCTTTCATCTA1640.1418317045749373No Hit
CATAGACCATCCTCCCACCTTGACCTCCCCAGTGCTGGAATTACAGGAGT1640.1418317045749373No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGTATTACAGGTG1600.1383723947072559No Hit
CATAGATCCCAGGCTTTAGAAAATATACCATGTCGTCAGTGTAGGGATAG1600.1383723947072559No Hit
CATAGAGATGTCAAGAGCAATGCCCATGCCTAGCCATTTTTGGTTCTATG1570.13577791230649486No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA1560.1349130848395745No Hit
CATAGAAGGTGATAATCATGACAGCCAACTGATCTTCGACAAAGCAAACA1550.13404825737265416No Hit
CATAGAAGGTGATAATCATGACAGCCAACTGATCTTTGACAAAGCAAACG1520.1314537749718931No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTAGGATTACAAGTG1520.1314537749718931No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTTGGATTACAGGTG1500.1297241200380524No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA1470.12712963763729135No Hit
CATAGAGGGACGGAGGCAAGAGGATAATGCTCTATGTGTAGAACCATGTC1390.12021101790192856No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGGGCTGGGATGACACGCA1370.11848136296808787No Hit
CATAGAAGGTGATAATCATGACAGCCAACTGATCTTTGACAAAGCAAACA1360.1176165355011675No Hit
CATAGACCATCCTCCCACCTTGACCTTCCCGGTAGCTGGGACTACAGGCA1350.11675170803424717No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA1350.11675170803424717No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA1340.11588688056732681No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTACTGGGATTATAGGCG1320.11415722563348611No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGGGATGACAGGCA1300.11242757069964542No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA1280.1106979157658047No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA1280.1106979157658047No Hit
CATAGACTCAAGAAACTTACAATCATGGCAGAAGGTGAAGGGGAAGCAAA1260.10896826083196401No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGAGATTACAGAAG1220.10550895096428263No Hit
CATAGACCATCCTCCCACCTTGACCTCCCAAAGTGCTGAGATTACAGGCA1190.10291446856352157No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)