FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155867
Sequences flagged as poor quality0
Sequence length150
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA3904525.05020305773512No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT111167.131721275189745No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACATCTATGTGTAG87975.643914362886307No Hit
CATAGATGTTGTTGTTCTGTTGCCCAATATGAACAGAAAGAAGCTCTATG52643.377238286487839No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCGAAAAACACCCTCTATGTGT52163.346442800592813No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTGTGTGGCCAACAGGAAGGTCTA51103.278436102574631No Hit
CATAGATGTTGTTGTTCTGTTCCCCAATATGAACAGAAAGAAGCTCTATG50873.2636799322499312No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTCAGTGTACTATGGCTTAAT50273.2251855748811487No Hit
CATAGAACCAACCCTGATTCTGCTGCTCACTCTTTGGGTTCTATGTGTAG46682.9948610032912675No Hit
CATAGAACAATCAGGCACCCACCATGCTGAAGTCCCATGATCTATGTGTA46102.9576497911681114No Hit
CATAGATGAAAGAGCATTGGTTGTGACACCGAAAAACACCCTCTATGTGT46052.954441928054046No Hit
CATAGATCTCAAACAGCCTCTCCCAGGAAAGTTGGAACCTATCAGTGTCT38022.4392591119351756No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACATTTATCGGGAGCCACAGA35382.269883939512533No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAATTCTCTATGTG30471.9548717817113308No Hit
CATAGAGCCATCATCATTTCTCACCCAGGGTAATTCTGGCCTTGTTCTAT28101.8028190701046405No Hit
CATAGATCTCAAACAGCCTCTCCCAGGGTAATTCTGGCCTTGTTCTATGT15580.9995701463427153No Hit
CATAGATAGCAGCAATCTCAGGCCTGGGAGACCCCATATCTACCAAAGAT10530.6755759718221304No Hit
CATAGATCCCTGGCAAGAATTCCTCTTCTTCCTCCTCCTGTCTATGTGTA10060.6454220585499175No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAAATTCTCTTGACA9550.6127018547864526No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACCATG9510.6101355642952004No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAGTGTAGTATGCAGTCTGTGA9380.6017951201986308No Hit
CATAGAAAGGGACAAGGGCTCACTCTGCTGCTCACTCTTTGGGTTCTATG8710.5588097544701572No Hit
CATAGATCAAGGTGTGAGCATGGTCCTCCGATGCTTATTACATTGTTCTA8640.5543187461104659No Hit
CATAGATGTTGTTGTTCTGCTGCTCACTCTTTGGGTTCTATGTGTAGAAC7590.4869536207150968No Hit
CATAGAGAAACTTTTAATAATGAAATACTGGGGGAGGCTGAAACTCTAAG7470.47925474924134037No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTGTCTCATAGAGAAGCTTTG7340.4709143051447709No Hit
CATAGATGTTGTTGTTCTGTTGCCCACTCTTTGGGTTCTATGTGTAGAAC7120.45679970744288395No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGTATGCAGTCTGT6290.40354917974940174No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGGTAAACAAACTT5780.3708289759859367No Hit
CATAGAGCCATCATCATTTCTCACCCAGTATGCAGTCTGTGAGCTGTCTA5410.3470907889418543No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTGAGGTTTCCTGGGC5400.34644921631904124No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAGGAAAGTTGGAACCTATC5060.32463574714339793No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCTGTCAGTGCCATACCAAGAATAA4850.31116272206432405No Hit
CATAGAAAGGGACAAGGGCGCACTCTAGCCTGGGAGACATCTATGTGTAG4210.27010207420428956No Hit
CATAGAAAGGGACAAGGGCTCACTCTCTGCTGCTCACTCTTTGGGTTCTA3400.21813469175643338No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAAATTCTCTTGAC3170.20337852143173346No Hit
CATAGATCCCTGGCAAGAATTCCTCAATGCTCATTCTCACAACCCAATCT3020.1937549320895379No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAAGGGAGAATCTATGTCGT2990.19183021422109875No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAGTGTAGGTAAACAAACTTCT2770.1777156165192119No Hit
CATAGAACTGAAACTAGGAAACATGTCTGTGCCATACCAAGAATAAGAAC2620.1680920271770163No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTCAGGAAAGTTGGAA2600.1668088819313902No Hit
CATAGATCCAGCTTCATCCATGTCCCTCCTCTTCTTCCTCCTCCTGTCTA2570.16488416406295112No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTGCTGCTCACTCTTTG2510.16103472832607288No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAAGGGAGACCCCATATCTA2370.15205271160669032No Hit
CATAGAGGAAAGAACAACTGCGGACGCATAGAGGCAAGGGTACTATTTTG2260.1449954127557469No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCGTGCTCTTGGC2220.14242912226449472No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACCAAAAGCACAAG2160.13857968652761649No Hit
CATAGAACAATCAGGCACCCACCATGGCTTAATGTTTCTCTTTTGCTCTA2130.13665496865917737No Hit
CATAGATCCAGCTTCATCCATGTCCCGACCAAAAGCACAAGGGAGAATCT2110.13537182341355128No Hit
CATAGATCCCTGGCAAGAATTCCTCAATATGAACAGAAAGAAGCTCTATG2070.13280553292229913No Hit
CATAGATCCAGCTTCATCCATGTCCCAGAGGCAAGGGTACTATTTTGATT2060.1321639602994861No Hit
CATAGAACAATCAGGCACCCACTATGGCTTAATGTTTCTCTTTTGCTCTA1930.1238235162029166No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1860.11933250784322531No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA1830.11740778997478618No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA1800.11548307210634708No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA1740.11163363636946884No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGCTGCTGCTCACTCTTTGGG1730.1109920637466558No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGAAGCTTTGAGAT1610.10329319227289932No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACCCCATATCTACC1580.10136847440446022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)