FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97219
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3450335.4899762392125No Hit
CATAGAAGAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG46684.801530565013012No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACACCTGTAATCACAGC32063.29770929550808No Hit
CATAGAGGGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT21312.1919583620485708No Hit
CATAGACTTCAGCCCTCACAAGCCTTACCTCAAATGCCAGGCTCTATGAG20312.089097810098849No Hit
CATAGACACATGTAGGATGGGGTGGCTGGGCATTGCTCTTGACATCTCTA18271.8792622841214166No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTGTCTCTGACTGTGT15791.6241681152861065No Hit
CATAGACACATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA13661.4050751396331993No Hit
CATAGAGGGTGCTCCTGTACTGGGTAGTGGTAGTCTATGAGACCAAGTCT12211.2559273393061028No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTAGTCTATGAGACCAAGTCT10411.0707783457966036No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAGTAATAGCACTTT9891.0172908587827483No Hit
CATAGAGGTGTCCTTTCCCCACTTTACACTGACGACATGGTTCTACACAT8660.8907723798845906No Hit
CATAGAGCATTACCCTCAAACTATCCCTACGACATGGTTCTACACATAGA7830.8053981217663214No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAATCACAGCACTTT7330.7539678457914605No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTATGAGACCAAGTCTCTGCTATCC6840.7035661753360969No Hit
CATAGAACTCCATCATAAGTCAAAGAGCACACTGATGAGGGTATAAGGTC6840.7035661753360969No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAATCCCAGCACTTT6720.6912229091021302No Hit
CATAGACACATGTAGGATGGGGTGGCTTCCCTTACACCTTCTGCCATGAT6580.6768224318291692No Hit
CATAGACACATGTAGGATGGGGTGGCCTCTCCTTCACTTTCTGCCATGAT5890.6058486509838612No Hit
CATAGAACTGTTTAAGAGAAGTCAGCGACACTGATGAGGGTATAAGGTCT5760.5924767792303973No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA5550.5708760633209558No Hit
CATAGAACCAAAAATGGCTAGGCATGTGGCTCACACCTGTAATCACAGCA5540.5698474578014585No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACGCCTATAATTCCAGC5240.538989292216542No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTTGCAATATAGATGA4780.49167343831967No Hit
CATAGACACATGTAGGATGGGGTGGCTCACGTGTGTAATCTCAGCACTTT4770.4906448328001728No Hit
CATAGAACCAAAAATGGCTAGGCATGTTGGCTCACACCTGTAATCACAGC4620.47521575000771454No Hit
CATAGAAAATAATGTGGCTGGGCATTGCTCTTGACATCTCTATGAGACCA4610.47418714448821736No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGGATGATCAATGCTGCTTCTAT4200.43201431818883135No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGC3950.40629918020140093No Hit
CATAGAACCAAAAATGGCTAGGCATGGTGGCTCACACCTGTAATCACAGC3900.40115615260391485No Hit
CATAGACACATGTAGGATGGGGTGGCTCATGCCTGTAACCCTAGCACTTT3850.3960131250064288No Hit
CATAGAGGTGTCCTTTCCCCACTTTATGTTTTTGTATGCTTTGTCAAAGA3430.3528116931875457No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGC3270.33635400487559014No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAATGCCATCACAGTTCATTGTA3220.33121097727810406No Hit
CATAGAGGTGTCCTTTCCCCACTTTATGTTTTTGTTTACTTTGTTGAAGA3170.326067949680618No Hit
CATAGAAGCATGGAAGACAAACAGCATGGCGGTGTTTGCAGATTTGGACC3010.3096102613686625No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGTTCACTCCTGTAATCCCAGC3000.3085816558491653No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTATATTTTCTAAAGCCTGGG2870.2952097840957014No Hit
CATAGACACATGTAGGATGGGGTGGCTCATGCCTGTAATCCTAACACTTT2820.29006675649821534No Hit
CATAGAAAATAATGTGGCCGGGCATGGTAGCTCATGCCTGTAATCCCAGT2680.27566627922525433No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACACATGGAGGATGATCAAT2630.27052325162776825No Hit
CATAGACACATGTAGGATGGGGTGGCTCATGCGTGTCATCCCAGCCCTTT2540.26126580195229326No Hit
CATAGACACATGTAGGATGGGGTGGGCATTGCTCTTGACATCTCTATGAG2360.24275090260134335No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTACACTGACGACATG2330.23966508604285172No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTATTATCCTAGCACTTT2010.20674970941894072No Hit
CATAGAAAGTCTGGACCAAGTGCCTCACAGTTCATTGTATTCTCTATGAG1750.18000596591201307No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG1720.17692014935352143No Hit
CATAGAAAGTCTGGACCAAGTGCCTCCGTCCCTCTATGAGACCAAGTCTC1720.17692014935352143No Hit
CATAGAACCAAAAATGGCTAGGCATGTTTGGCTGTCATGATTATCACCTT1720.17692014935352143No Hit
CATAGACACATGTAGGATGGGGTGGCTTTTGTTCCCTTACCTCAAATGCC1670.17177712175603535No Hit
CATAGAAAGTCTGGACCAAGTGCCTCCGTCCCTCTATCCTCTTGCCTCCG1600.16457688311955482No Hit
CATAGATCATGGGACTTCAGCATGGGCATTGCTCTTGACATCTCTATGAG1600.16457688311955482No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC1550.15943385552206873No Hit
CATAGACACATGTAGGATGGGGTGGCTCATGCCTGTAATCCCAGCACTTT1550.15943385552206873No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1540.15840525000257152No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCATGCCTATAATTCCAGC1410.14503337824910767No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACACTGACGACATGGTTCTA1370.14091895617111883No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGC1360.1398903506516216No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTGCTACCGTAAGGTCAAGGTGGGA1310.1347473230541355No Hit
CATAGACACATGTAGGATGGGGTGGCTGTCATGATTATCACCTTCTATGA1310.1347473230541355No Hit
CATAGAACCAAAAATGGCTAGGCATGGGCATTGCTCTTGACATCTCTATG1280.13166150649564387No Hit
CATAGATGAAAGACAAGCAGGGAAGCCAGACAGGATGCGCAGATGGTCTA1280.13166150649564387No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1260.12960429545664942No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACACTGACGACATGGTTCCA1230.12651847889815776No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACACTTGTAATCCTAGC1230.12651847889815776No Hit
AATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG1180.12137545130067168No Hit
CATAGAACCAAAAATGGCTAGGCATGTTGGCTCACGCCTATAATTCCAGC1170.12034684578117445No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGTGTGTGCCTGTAGTCCCAGC1160.11931824026167726No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1140.11726102922268282No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG1130.1162324237031856No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGTGCTGGGTAGTGGTAGTCT1100.11314660714469393No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTATATTTTCTAAAGCCTGGGATC1050.10800357954720784No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG1030.10594636850821341No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1010.10388915746921898No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACACCTGTAATACCAGC1000.10286055194972175No Hit
CATAGAACCAAAAATGGCTAGGCATGGTGGCTCACGCCTATAATTCCAGC1000.10286055194972175No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG980.10080334091072732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)