FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140647
Sequences flagged as poor quality0
Sequence length150
%GC38

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGCTTGGGTGCGAACATCAAGGAAGTTTCTGTGAGATCTATGAGA1696512.062112949440799No Hit
CATAGAGCTTTTTCTCCAGCCTCCAAGTAATAACCAGGCCCCTCTATGAG88956.324343924861532No Hit
CATAGAGAAGACTCCCTCAACCCACCCACAGCCAGGAAAGAATCTATGAG79265.635385041984542No Hit
CATAGACGGATTATTCTCTCCATGGTCTACCAGTTATTAGTTGAATGAGC69704.955669157536243No Hit
CATAGAAATGATGCTGAAGGGCCTGCCCTCTCTGCTGTTCCTTCTATGAG59664.241825278889703No Hit
CATAGAGGAGGTGAAAGAAATCTACAATGGGTTCTGGGCCCCAGTGTGAA54963.9076553356985926No Hit
CATAGACTCATTGCACTTTCCACAACTGTGTGCTTGAACCAGATTCTATG37902.694689541902778No Hit
CATAGATCATGGGACTTCAGCATGGCTCAGGTATGTCTTTATTAGCTCTA35142.4984535752628925No Hit
CATAGACTCATTGCACTTTCCACAACTGTCATTGTCGCTGTCCCATCTAT26941.9154336743762754No Hit
CATAGATCACGTAGAAACTGGAGAGGCTAATCTGAAATCTTCGTGTTCTA26601.8912596784858546No Hit
CATAGATGTTTTATCAAAGGCATGCTCATTTATTTTAAAGGACTGGAAGC26421.8784616806615144No Hit
CATAGACTCATTGCACTTTCCACAACTGTCCCAACTGTCTCTGAAAAATT24291.7270187064068199No Hit
CATAGAAGTCACGAGTTTTGTTGTTGTTCTTCCTTTTCTGCCTTCATCTA22531.6018827276799363No Hit
CATAGAAATGATGCTGAAGGGCCTGTTTCCCCACTCAAATACCATCTATG20521.458971751974802No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG17161.2200757925871153No Hit
CATAGAGGAGGTGAAAGAAATCTACAATGGGCCCCAGTGTGAATACTTCT16241.1546638037071533No Hit
CATAGACCAGCAGACACTCCCATCATTTATTTTAAAGGACTGGAAGCCTC14871.0572568202663406No Hit
CATAGAGTGCCTGTTTCCTCATTCGTCTGTTTCCCCACTCAAATACCATC13430.9548728376716177No Hit
CATAGAAGGACAAAGACATTTAGGACCCACGCTGTCCTTCTCTGAATCTA12960.9214558433525066No Hit
CATAGACACAACAGAGAGAACGGGCTACACTGACGCTATACCACACTACA12040.8560438544725447No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGAAGTGATGGGCTAGATCTATGA11710.8325808584612541No Hit
CATAGATGTTTTATCAAAGGCATGCTCATCAGGAACCATGGGAGGTCTAT11040.7849438665595426No Hit
CATAGATCACGTAGAAACTGGAGAGGCCAGTGCAGTGGGGAGGCAGGCTG11020.7835218668012827No Hit
CATAGATGTTTTATCAAAGGCATGCTCATCAAGGAAGTTTCTGTGAGATC10630.7557928715152118No Hit
CATAGACCAACATTTCTTCTCCCAGGGTACACTGACGCTATACCACACTA10470.7444168734491315No Hit
CATAGAGCTTTTTCTCCAGCCTCCAAGGGGTAAGGCGTACTGGTCTATGA10390.7387288744160914No Hit
CATAGAGAAGACTCCCTCAACCCACGCTGTCCTTCTCTGAATCTATGAGA9790.6960688816682902No Hit
CATAGAGTCCAACTATTCCAGCACCAAGGGGTAAGGCGTACTGGTCTATG9220.655541888557879No Hit
CATAGACCCAAGACCCCAGCCTTTACGATCATTGTTCACTGCAGCCTCTA8980.6384778914587584No Hit
CATAGACTCATTGCACTTTCCACAACTGTACACTGACGCTATACCACACT8270.587996900040527No Hit
CATAGACCAGCAGACACTCCCATCATCAGGAACCATGGGAGGTCTATGAG8020.5702219030622765No Hit
CATAGACCAGCAGACACTCCCATCATTCAGGGTGGAAGGGTAAGAGAGGG7960.5659559037874964No Hit
CATAGATGGCCAAGATACGAGCACATACACTGCCCTCTCTGCTGTTCCTT7520.5346719091057754No Hit
CATAGACCAGCAGACACTCCCATCATACACTGACGCTATACCACACTACA7420.5275619103144753No Hit
CATAGAGTCTGAATGGTGGGAGAGTGAAAGAAATCTACAAAGGATTCTGG7330.5211629114023051No Hit
CATAGATGGCCAAGATACGAGCACATACACTGACGCTATACCACACTACA7260.5161859122483949No Hit
CATAGATCATGGGACTTCAGCATGGCACACTGACGACATGGAGACAGCCG7120.5062319139405747No Hit
CATAGACAGTGCCTTTGTGCGTGTTAGGAGAGCTTCACAACCTTGAAAGG6970.49556691575362427No Hit
CATAGAAGCTGAGAAGACTTCCTAATGCAGGACCTAAGGCTGGTCTCAAA6890.4898789167205842No Hit
CATAGATGTGTAGCCTGGGTCTGACATGCCAGGAATCAATGTTCTATGAG6160.43797592554409265No Hit
CATAGACATTTAATCCTCACAATGACCCATTGCTTCTTGTGGTAACTGGT5830.414512929532802No Hit
CATAGAGCTGTACTGCATCTTTTCTCAGACACACTGACGATCATTGTTCA5800.41237992989541195No Hit
CATAGAGTCTGAATGGTGGGAGAGTGAAGTTCTGCTTGTGGTGAGTTGAC5750.40882493049976176No Hit
CATAGATCAAGGAAAACACCAGCCCACGCTGTCCTTCTCTGAATCTATGA5230.37185293678500075No Hit
CATAGACTCATTGCACTTTCCACAACTGTCTGCCTCTAAGTAAACTGAAT5020.3569219393232703No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGCTGAAGTGATGGGCTAGATCTA4740.33701394270762974No Hit
CATAGAAAATTTGTGATGGTAAATCATGGGACATGCCAGGAATCAATGTT4720.33559194294936967No Hit
CATAGACCTCCGACAGTTTTTATGCACCTTCATTGTTGCTCTATGAGACC4650.3306149437954596No Hit
CATAGAGTCCAACTATTCCAGCACCAAGCCCTGCAGTCTTTGGAGGAATC4290.3050189481467788No Hit
CATAGAAAAAACAGTTGGCCAGGCATCCACGCTGTCCTTCTCTGAATCTA4120.2929319502015685No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGATGCTGAAGTGATGGGCTAGAT4060.2886659509267883No Hit
CATAGACCTCCGACAGTTTTTATGCACTGTCCCAACTGTCTCTGAAAAAT3720.26449195503636763No Hit
CATAGACGGATTATTCTCTCCATGGTCTACACTGACGCTATACCACACTA3580.2545379567285474No Hit
CATAGAAGCTGAGAAGACTTCCTAATGCAGAAGTAGGAAGTATTACCCCT3560.2531159569702873No Hit
CATAGACCAACATTTCTTCTCCCAGGGTACACTGACGACATGGTTCTACA3520.25027195745376724No Hit
CATAGAGCTGTACTGCATCTTTTCTCAAACTGCTGGGGTTGCTCTATGAG3440.24458395842072705No Hit
CATAGATCAAGGAAAACACCAGCCCACACTGACGATCATTGTTCACTGCA3440.24458395842072705No Hit
CATAGACTCATTGCACTTTCCACAACTGTACACTGACGATCATTGTTCAC3410.242450958783337No Hit
CATAGAGAAGACTCCCTCAACCCACCACACTGACGCTATACCACACTACA3400.24173995890420696No Hit
CATAGACTCATTGCACTTTCCACAACTGTTCTTCCTTTTCTGCCTTCATC3340.23747395962942686No Hit
CATAGAAATGATGCTGAAGTGATGGGCTAGATCTATGAGACCAAGTCTCT3340.23747395962942686No Hit
CATAGACTCATTGCACTTTCCACAACTGTCTCTCTTACCCTTCCCCACAC3310.2353409599920368No Hit
CATAGACTCATTGCACTTTCCACAACTGTACACTGACGACATGGTTCTAC3160.22467596180508648No Hit
CATAGAAATGATGCTGAAGGGCCTGTGCTGAAGTGATGGGCTAGATCTAT2860.20334596543118585No Hit
CATAGATCAAGGAAAACACCAGCCCACCCACAGCCAGGAAAGAATCTATG2720.1933919671233656No Hit
CATAGATGGCCAAGATACGAGCACATAGAGATCCCACCATTTGCCATCTA2700.19196996736510555No Hit
CATAGAAAAAACAGTTGGCCAGGCATGACATGGTTCTACACATAGAAAAA2690.1912589674859755No Hit
CATAGAGATCCCACCATTTGCCATCTATGAGACCAAGTCTCTGCTACCGT2190.1557089735294745No Hit
CATAGAGTGCCTGTTTCCTCATTCGTCTCATAGAAGTATTCACACTGGTG2180.15499797365034448No Hit
CATAGAAATGATGCTGAAGGGCCTGCTCTACACATAGAAATGATGCTGAA2160.15357597389208444No Hit
CATAGACTCATTGCACTTTCCACAACTGTATGCTGAAGTGATGGGCTAGA2130.15144297425469438No Hit
CATAGAAATGATGCTGAAGGGCCTGCACTGACGACATGGTTCTACACATA2130.15144297425469438No Hit
CATAGACCTAAAAGGCTATTGAAAGGAAGGACATGCCAGGAATCAATGTT2080.14788797485904426No Hit
CATAGATGTGTAGCCTGGGTCTGTCATTGTCGCTGTCCCATCTATGAGAC1930.137222976672094No Hit
CATAGAAAAAACAGTTGGCCAGGCATGTCTTTATGGCTCAGGTATGTCTT1800.12797997824340368No Hit
CATAGACCCAAGACCCCAGCCTTTACACTGACGACATGGTTCTACACATA1800.12797997824340368No Hit
CATAGAAATGATGCTGAAGGGCCTGCAGTCTTTGGAGGAATCTATGAGAC1760.12513597872688362No Hit
CATAGAAGGACAAAGACATTTAGGACCCACACTGACGCTATACCACACTA1760.12513597872688362No Hit
CATAGAGAAGACTCCCTCAACCCACCACATTGCTTCTTGTGGTAACTGGT1710.1215809793312335No Hit
AAGGATTCTGGGCCATCTATGAGACCAAGTCTCTGCTACCGTACACGAAG1630.11589298029819335No Hit
CATAGACGTGACTAAAAGCATGTTGGTGCATTACAGAGAGGAGATCTATG1480.10522798211124304No Hit
CATAGAGTGTCTGTTTCCCCACTCAAATACCATCTATGAGACCAAGTCTC1480.10522798211124304No Hit
CATAGAAATGATGCTGAAGGGCCTGGAAATGATGCTGAAGTGATGGGCTA1480.10522798211124304No Hit
CATAGACATTTAATCCTCACAATGACCCATACACTGACGACATGGGTCTA1480.10522798211124304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)