FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157863
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG5376934.060546169780125No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG89605.675807503974966No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG62403.9527945116968515No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA53743.4042175810671282No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC42892.7169127661326593No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG35782.2665222376364316No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC32302.046077928330261No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG22941.4531587515757334No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA22851.4474576056454014No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA18661.1820375895555006No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT18601.178236825601946No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC17341.098420782577298No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC16781.0629469856774545No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGGAGGGAAGGAAGGGCA13310.8431361370302098No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA12310.779790071137632No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT10930.6923725002058747No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCATGAGGGATTATCAGTAGT10620.6727352197791756No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCCACACTCATGCAAAGCTGGT10580.6702013771434725No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT10220.6473967934221445No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA9940.6296598949722227No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA9210.583417266870641No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA8050.5099358304352508No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA7930.5023343025281415No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTGGCTAGTCCGTCACCCCTAAT7790.4934658533031806No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG7500.47509549419433306No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG7270.4605258990390402No Hit
CATAGAGAGGTCGCCCAGGTATTTCTTATAGCCAGTGTCTCCCCTCTATG6820.43202016938738025No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA6790.43011978741060286No Hit
CATAGATTAAATGCTGCTATGAGAGAGGTGGCATTGTGACATATTTCTGC5680.35980565426984157No Hit
CATAGAAGATGGTCTGCTACACTGGTGTTCCACACTCATGCAAAGCTGGT5320.3370010705485136No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATTCTTATAGCCAGTGT5240.33193338527710736No Hit
CATAGATCACCCAGGTAATCACTAGGTGTAGCATGTTGAGATGAATAATT4810.30469457694329893No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG4770.3021607343075958No Hit
CATAGAGGTCGCAGCTACCCAGAAAGGAGGGAAGGAAGGGCAAACTCTAT4750.30089381298974427No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT4690.2970930490361896No Hit
CATAGACCCTTCTCCATGCCACATCACAGCATGTTGAGATGAATAATTGA4590.29075844244693183No Hit
CATAGAGGGGCATGCTGGATAAATCTTAACTTCAGGGTGCTCCTCTATGA4340.2749219259737874No Hit
CATAGAGTCTCGCTAATAGTTTTACCTCAAATAGTTTTTCCAAATATAAG3790.24008158973286964No Hit
CATAGATCATGCAAAGAACACAGGCCATGGGTCCTTTTCACATCATCTAT3780.23944812907394386No Hit
CATAGAAGGAGGGGAAACTGAGGCCACACTCATGCAAAGCTGGTCTATGA3660.23184660116683456No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC3510.22234469128294787No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGGGAGGGAAGGAAGGGC3450.2185439273293932No Hit
CATAGAACCAGAGTAATGAGGGATGCTCCGTAGGCTAGTCCGTCACCCCT3220.20397433217410033No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA3190.202073950197323No Hit
CATAGACCCTTCTCCATGCCACATCAGTGTAGTTTTTCCAAATATAAGAT3050.1932055009723621No Hit
CATAGATCATGGGACTTCAGCATGGCCCTCTATGTAGGAAAGCAATCACC3010.190671658336659No Hit
CATAGATCATGGGACTTCAGCATGGCATGTTGAGATGAATAATTGAGACT2950.18687089438310434No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCACTGAGCAGAG2930.18560397306525278No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG2920.184970512406327No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG2880.1824366697706239No Hit
CATAGATGTGGCTATGCAGACTGAGTGCAGCTATATTGGAGGAAAAGTCT2870.18180320911169812No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG2850.18053628779384656No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGAGGGAAGGAAGGGCAAACTCTA2810.17800244515814345No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTAGTCTCAAT2780.17610206318136612No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA2770.17546860252244034No Hit
CATAGATCATGGGACTTCAGCATGGCTAGTCCGTCACCCCTAATCTATGA2720.17230129922781146No Hit
CATAGATGTGCCTCTCCAACATTCACCAAGTCACCCAGCCTCTATGAGAC2540.16089900736714746No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA2510.15899862539037013No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG2470.15646478275466702No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG2360.14949671550648347No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG2330.14759633352970614No Hit
CATAGACCCTTCTCCATGCCACATCATGCAAAGCTGGTCTATGAGACCAA2260.1431621089172257No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTTCTTATAGCCAGTGTCTCC2250.14252864825829992No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAAGCATGTT2230.14126172694044836No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTTCCCCTCTCTCTGAATAACTC2210.1399948056225968No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG2180.13809442364581948No Hit
CATAGACCCTTCTCCATGCCACATCACTAATAGTTTTTCCAAATATAAGA2110.13366019903333903No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG2100.13302673837441326No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT2010.12732559244408126No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGCTAGTC2000.12669213178515548No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTACCATGGGT1860.1178236825601946No Hit
CATAGATCAACAATGGATGAGCAAAAGGAAAGCAATCACCGCCAGTCTAT1850.11719022190126882No Hit
CATAGAACTTTGTGCCCCCAGTGTCTAGCATGTTGAGATGAATAATTGAG1610.10198716608705016No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1590.10072024476919861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)