FastQCFastQC Report
Wed 8 May 2024
EGAF00005807845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157863
Total Bases23.6 Mbp
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA5415934.30759582676118No Hit
CATAGACCTCCTTTCCTCCACGGCAAACACTCAAAACAGCCCTCTATGTG90085.706213615603403No Hit
CATAGATACGATCATAAGGGTGGGGCGAAAGTGATCAGAAGCTCTATGTG68084.312600165966693No Hit
CATAGACACCATTGGAGACCTGAGCATCCCTCATTACTCTGGTTCTATGT53753.4048510417260536No Hit
CATAGACCAGCTTTGCATGAGTGTGGTTAATGAAGCTCTTCCATGTCCCA42502.692207800434554No Hit
CATAGACCAGCTTTGCATGAGTGTGGGAAGTAGGGAATGATTACAAGTTC41742.644064790356195No Hit
CATAGATGGTGGGTTCTGGAGAGAGCATCCCTCATTACTCTGGTTCTATG34992.216478845581295No Hit
CATAGACACACCCAACTCTGCTCAGTCTGCATAGCCACATCTATGTGTAG32252.042910625035632No Hit
CATAGATGTTTGAAACTCCTCTACCTAAGACACTGGGGGCACAAAGTTCT18541.1744360616483913No Hit
CATAGACACACCCAACTCTACTCAGTCTGCATAGCCACATCTATGTGTAG17421.1034884678487042No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCAGAGACTTGGCCTCAGTTTCCCCT13210.836801530440952No Hit
CATAGACTTACTGCCCTCACTCCGTCTGCATAGCCACATCTATGTGTAGA12200.7728220038894484No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGACTTGGTCTCATAGAGGGGAG10870.68857173625232No Hit
CATAGAGGGGAGACACTGGGGGCACAAAGTTCTATGTGTAGAACCATGTC10710.6784363657095076No Hit
CATAGATGTGAGCACTACTGATAATCCCTCATGATGTTTTAAAATGAGCA10680.6765359837327303No Hit
CATAGACCAGCTTTGCATGAGTGTGGGGAAGTAGGGAATGATTACAAGTT10520.6664006131899178No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCACGGCAAACACTCAAAACAGCCCT9930.629026434313297No Hit
CATAGACTGGCGGTGATTGCTTTCCTCCACGGCAAACACTCAAAACAGCC9710.6150902998169299No Hit
CATAGACCTGACCTCATGATCTGCCTGTGTTCTTTGCATGATCTATGTGT9250.5859511095063441No Hit
CATAGACCAGCTTTGCATGAGTGTGGCATGGAGAAGGGTCTATGTGTAGA9150.5796165029170863No Hit
CATAGACTTACTGCCCTCACTCAGTCTGCATAGCCACATCTATGTGTAGA7790.4934658533031806No Hit
CATAGATTAGGGGTGACGGACTAGCCACTTGGCCTCAGTTTCCCCTCCTT7720.4890316286907001No Hit
CATAGACCAAACACAGAAGACATGGCAAACACTCAAAACAGCCCTCTATG7520.4763624155121846No Hit
CATAGAGGGGAGACACTGGCTATAAGAAATACCTGGGCGACCTCTCTATG6890.43645439399986063No Hit
CATAGACCAGCTTTGCATGAGTGTGGCCTGTGTTCTTTGCATGATCTATG6880.43582093334093486No Hit
CATAGAGGGGAGACACTGGCTATAAGAACTTGGTCTCATAGAGGGGAGAC6610.41871749554993887No Hit
CATAGATGACCTGTTAATCTGCCCCCATAGGCAGATCCAAGAGAAGAGTT5580.3534710476805838No Hit
CATAGACCAGCTTTGCATGAGTGTGGAACACCAGTGTAGCAGACCATCTT5370.34016837384314247No Hit
CATAGAGGGGAGACACTGGCTATAAGAATAGAGGGGAGACACTGGGGGCA5040.3192641720985918No Hit
CATAGACCTCCTTTCCTCCACGGCAAAGCTGCTATGGGATCTTCTATGTG5000.3167303294628887No Hit
CATAGAGTCTCAATTATTCATCTCAACATGCTACACCTAGTGATTACCTG4840.30659495892007627No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGACACTGGGGGCACAAAGTTCT4750.30089381298974427No Hit
CATAGAGTCTCAATTATTCATCTCAACATGCTGTGATGTGGCATGGAGAA4740.3002603523308185No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCTTTCTGGGTAGCTGCGACCTCTAT4480.2837903751987483No Hit
CATAGAGGAGCACCCTGAAGTTAAGATTTATCCAGCATGCCCCTCTATGT4230.26795385872560384No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGCAGAGACTTGGTCTCATAGAG3940.2495834996167563No Hit
CATAGAGGCTGGGTGACTTGGTGAATGTTGGAGAGGCACATCTATGTGTA3930.24895003895783052No Hit
CATAGAGATGATGGGATCTTATATTTGGAAAAACTATTTGAGGTAAAACT3900.24704965698105322No Hit
CATAGATGATGTGAAAAGGACCCATGGCCTGTGTTCTTTGCATGATCTAT3860.24451581434535005No Hit
CATAGACCAGCTTTGCATGAGTGTGGCCTCAGTTTCCCCTCCTTCTATGT3690.23374698314361186No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCCAGAGACTTGGCCTCAGTTTCCCC3650.23121314050790878No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCAAGCAGATCTGTGTTCTATGTGTA3590.22741237655435406No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCTTCTATGTGTAGAACCATGTCGTC3250.20587471415087766No Hit
CATAGATTAGGGGTGACGGACTAGCCTACGGAGCATCCCTCATTACTCTG3170.20080702887947144No Hit
CATAGATACGATCATAAGGGTGGGGCTGGGCTCAGTGGCTTATGCCTGTA3160.2001735682205457No Hit
CATAGAGATGATGGGATCTTATATTTGGAAAAACTACACTGATGTGGCAT3120.19763972558484258No Hit
CATAGAGGTGAGCGGCTGTCTCCAGAAGTCCGCGCAGAGCCTTCAGGTCA2940.18623743372417856No Hit
CATAGACACACCCAACTCTGCTCAGTGGTAGCAGAGACTTGGCCTCAGTT2900.18370359108847545No Hit
CATAGAGTTATTCAGAGAGAGGGGAAATGAATGTTGGAGAGGCACATCTA2880.1824366697706239No Hit
CATAGAGTCTCAATTATTCATCTCAACATGCCATGCTGAAGTCCCATGAT2880.1824366697706239No Hit
CATAGATGGTGGGTTCTGGAGAGAGGGCGAAAGTGATCAGAAGCTCTATG2860.18116974845277234No Hit
CATAGACTTTTCCTCCAATATAGCTGCACTCAGTCTGCATAGCCACATCT2850.18053628779384656No Hit
CATAGATTAGGGGTGACGGACTAGCCATGCTGAAGTCCCATGATCTATGT2800.17736898449921767No Hit
CATAGACTGGCGGTGATTGCTTTCCTACATAGAGGGCCATGCTGAAGTCC2770.17546860252244034No Hit
CAGTTTCCCCTCCTTCTATGTGTAGAACCATGTCGTCAGTGTAGATCTCG2740.173568220545663No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA2670.16913399593318257No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCCGGATTCAAGCAATTCTTCTATGT2620.16596669263855368No Hit
CATAGAGTTTGCCCTTCCTTCCCTCCTGGCCTCAGTTTCCCCTCCTTCTA2540.16089900736714746No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA2530.16026554670822168No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA2460.15583132209574124No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG2350.1488632548475577No Hit
CATAGACCAGCTTTGCATGATGTGGCATGGAGAAGGGTCTATGTGTAGAA2310.14632941221185458No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA2280.14442903023507725No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGGGGAGACACTGGGGGCACAAA2280.14442903023507725No Hit
CATAGAGTTATTCAGAGAGAGGGGAAATGAGAGAAAACTACCCCAGGCTC2220.14062826628152258No Hit
CATAGAGATGATGGGATCTTATATTTGGAAAAACTATTAGTGATGTGGCA2150.13619404166904214No Hit
CATAGACCTGACCTCATGATCTGCCTACCTCCGCCTCCCAAAGTGCTGGG2130.1349271203511906No Hit
CATAGAGGGGAGACACTGGCTATAAGAAGAGGGGAGACACTGGGGGCACA1960.12415828914945237No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA1950.12352482849052661No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGCCCGCGCAGAGCCTTCAGGTCA1870.11845714321912038No Hit
CATAGACTGGCGGTGATTGCTTTCCTTTTGCTCATCCATTGTTGATCTAT1840.11655676124234304No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA1800.11402291860663992No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA1760.11148907597093682No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA1700.10768831201738217No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGTGCAGAGCCTTCAGGTCA1660.10515446938167905No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA1630.10325408740490172No Hit
CATAGAGTCTCAATTATTCATCTCAACATGCTAGACACTGGGGGCACAAA1630.10325408740490172No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)