FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18078
Sequences flagged as poor quality0
Sequence length150
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA371120.527713242615334No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA13097.240845226241841No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG9595.304790352915145No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG8484.690784378802965No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC7584.1929416970903866No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG6753.733820112844341No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG6043.34107755282664No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG5873.2470406018364866No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA3491.9305232879743335No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT3321.8364863369841797No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC2791.5433123133089943No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA2461.360769996681049No Hit
CATAGACCCTCTCTTACCCTTCCACCAACATGCTTTTAGTCACGTCTATG2281.261201460338533No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC2181.2058856068149133No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT1951.0786591437105875No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT1851.0233432901869675No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG1770.9790906073680716No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT1580.8739904856731938No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA1510.83526938820666No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT1330.7357008518641442No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT1320.7301692665117823No Hit
CATAGACCCCATGACTCAGCTCCTCAATCCTGTGTTCATGGCTTCTATGT1230.6803849983405245No Hit
CATAGACCCTCTCTTACCCTTCCACCCTGGGAGAAGAAATGTTGGTCTAT1100.6084743887598186No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT1060.5863480473503706No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG950.5255006084743887No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGTTTACCTCTCAGTTAT850.4701847549507689No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG820.45358999889368296No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT750.414868901427149No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACGAATGAGGAAACAGGCACTC730.4038057307224251No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT700.3872109746653391No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGCCATGCTGAAGTCCCA610.3374267064940812No Hit
CATAGATGGTATTTGAGTGGGGAAACAGGCCCTTCAGCATCATTTCTATG610.3374267064940812No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGTGTAGAACCATG610.3374267064940812No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG610.3374267064940812No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT590.32636353578935723No Hit
CATAGAATCTGGTTCAAGCACACAGTTAGATGCCTGGCCAACTGTTTTTT540.2987056090275473No Hit
CATAGATCTAGCCCATCACTTCAGCATCGCAGGCCCTTCAGCATCATTTC530.2931740236751853No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTGGGTCCTAAATGTCTT460.2544529262086514No Hit
CATAGAGGTGAGCGGCTGTCTCCAGTGTTACAAAAATTGGGAAGCGGTCT440.2433897555039274No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTACAGTTGTGGAAAGTG430.23785817015156543No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCAAGGCCATGCTGAAGTC430.23785817015156543No Hit
CATAGACCAGTACGCCTTACCCCTTGGGCTGGTGTTTTCCTTGATCTATG420.23232658479920343No Hit
CATAGAGGTGAGCGGCTGTCTCCACCAACATGCTTTTAGTCACGTCTATG420.23232658479920343No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACCCTGGGAGAAGAAAT420.23232658479920343No Hit
CATAGACCAGTTACCACAAGAAGCAATGTTGGTCTATGTGTAGAACCATG390.2157318287421175No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT390.2157318287421175No Hit
CATAGAGGTGAGCGGCTGTCTCCACACTGACCAACATGCTTTTAGTCACG380.2102002433897555No Hit
CATAGAACACGAAGATTTCAGATTAGCCTTCCTTTCAATAGCCTTTTAGG350.19360548733266955No Hit
CATAGAGGTGAGCGGCTGTCTCCACACTGTCATTGTGGGTTTTAACTACT340.18807390198030757No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTATGAGCATGCCTTTGA330.18254231662794557No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCTGAGAAAAGATGCAGTACAGCT320.1770107312755836No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGGGCTGGTGTTTTCCTTGA320.1770107312755836No Hit
CATAGACCAGTACGCCTTACCCCTTGGTGCTGGAATAGTTGGACTCTATG320.1770107312755836No Hit
CATAGAATCTGGTTCAAGCACACAGTACACTGTCATTGTGGGTTTTAACT300.1659475605708596No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGATGTAAAGGCTGGGGTCTTG300.1659475605708596No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGGGGTCCTAAATGTCTTTG280.15488438986613562No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG280.15488438986613562No Hit
CATAGACCCTCTCTTACCCTTCCACCCTGTGCATAAAAACTGTCGGAGGT280.15488438986613562No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA270.14935280451377364No Hit
CATAGATTCTTTCCTGGCTGTGGGTGCATAAAAACTGTCGGAGGTCTATG260.14382121916141166No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACCAGCCATGCTGAAGTCCCATG260.14382121916141166No Hit
CATAGATGACATGGGAAATTATGCTGCTCTAGTTGATGTTCGCACCCAAG250.13828963380904968No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGGGCTGGTGTTTTCCTT250.13828963380904968No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTGCATAAAAACTGTCGGAG250.13828963380904968No Hit
CATAGATGACATGGGAAATTATGCTGCTCTATGTAAAGGCTGGGGTCTTG240.1327580484566877No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGGTGTGCATAAAAACTGTCGGAGGT240.1327580484566877No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGTGCTCGTATCTTGG230.1272264631043257No Hit
CATAGACCAGTACGCCTTACCCCTTGCTACACATAGACCAACATGCTTTT230.1272264631043257No Hit
CATAGAACACCTGAACTACATAGCGGACACTGACGCCATGCTGAAGTCCC220.1216948777519637No Hit
CATAGAACATTGATTCCTGGCATGTCCCATGATTTACCATCACAAATTTT200.11063170704723974No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG200.11063170704723974No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA200.11063170704723974No Hit
CATAGAGCAACAATGAAGGTGCATAAAAACTGTCGGAGGTCTATGTGTAG200.11063170704723974No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCACGAATGAGGAAACAG190.10510012169487774No Hit
CATAGAACATTGATTCCTGGCATGTCCAGTGTATGAGCATGCCTTTGATA190.10510012169487774No Hit
CATAGAGGTGAGCGGCTGTCTCCATGGTGGGTTGAGGGAGTCTTCTCTAT190.10510012169487774No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)