FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82297
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3434641.734206593192944No Hit
CATAGAAGAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG46295.624749383331105No Hit
CATAGACACATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA16962.0608284627629194No Hit
CATAGAGGGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT15651.9016489057924346No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTAAAGTGCTGTACTT14521.7643413490163677No Hit
CATAGAGCATTACCCTCAAACTATCCCTAACACTGCCATCACAGTTCATT14291.7363937932123892No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG9851.1968844550834175No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACACCTGTAATCACAGC9631.1701520104013512No Hit
CATAGACACATGTAGGATGGGGTGGCTGGGCATTGCTCTTGACATCTCTA9611.167721788157527No Hit
CATAGAGGGTGCTCCTGTACTGGGTAGTGGTAGTCTATGAGACCAAGTCT8561.0401351203567566No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGCTGGAGGATGATCAATGCT5890.7157004508062262No Hit
CATAGACTTCAGCCCTCACAAGCCTTGGTATATTTTCTAAAGCCTGGGAT5240.6367182278819398No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAATCCCAGCACTTT5230.6355031167600277No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTAGTCTATGAGACCAAGTCT5190.6306426722723792No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACCAAAAACAATACAAAAAT4470.5431546714947082No Hit
CATAGAGCTATCTGGCAAAAACCCATCACACTGCCATCACAGTTCATTGT4140.5030560044716089No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAATCACAGCACTTT3680.44716089286365235No Hit
CATAGACACATGTAGGATGGGGTGGCACACTGCCATCACAGTTCATTGTA3610.43865511501026766No Hit
CATAGACTTCAGCCCTCACAAGCCTTACCTCAAATGCCAGGCTCTATGAG3430.4167831148158499No Hit
CATAGAGGTGTCCTTTCCCCACTTTATATTTTTCTTTTCTTTGTTGAAGA3340.405847114718641No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGCCATCACAGTTCATTG3320.4034168924748168No Hit
CATAGACACATGTAGGATGGGGTGGCCTCTCCTTCACTTTCTGCCATGAT3280.39855644798716844No Hit
CATAGATCATGGGACTTCAGCATGGGCATTGCTCTTGACATCTCTATGAG3030.36817866993936593No Hit
CATAGACACATGTAGGATGGGGTGGCTTCCCTTACACCTTCTGCCATGAT2800.3402311141353877No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTGTAGTAATAGCACTTT2790.3390160030134756No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAAAATACAAAAATTAG2570.3122835583314094No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGGATGATCAATGCTGCTTCTAT2560.31106844720949733No Hit
CATAGAAGCATGGAAGACAAACAGCATGGCGGTGTTTGCAGATTTGGACC2550.30985333608758525No Hit
CATAGACACATGTAGGATGGGGTGGCTCACACCTATTATCCTAGCACTTT2530.30742311384376103No Hit
CATAGACACATGTAGGATGGGGTGGCTCATGCCTGTAATCCTAACACTTT2400.29162666925890374No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAAAAATACAAAAATTA2380.2891964470150795No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACGCCTATAATTCCAGC2260.27461511355213436No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGACGACATGGTTATGTA2240.27218489130831014No Hit
CATAGACACATGTAGGATGGGGTGGCTCATGCGTGTCATCCCAGCCCTTT1940.23573155765094717No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTGACTGTGTTAATTTAAAAGA1930.23451644652903508No Hit
CATAGATCATGGGACTTCAGCATGGCCTGGTGTTGGGTCTGATCACCGCA1870.2272257797975625No Hit
CATAGAGCTATCTGGCAAAAACCCATCTAAAAAAATACAAACATTAGCCA1810.21993511306608987No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTTATGTAGACAGGGATTGATCTC1680.20413866848123263No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGC1600.19441777950593583No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG1600.19441777950593583No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1590.19320266838402372No Hit
CATAGACACATGTAGGATGGGGTGGGCATTGCTCTTGACATCTCTATGAG1540.18712711277446323No Hit
CATAGAAAGTCTGGACCAAGTGCCTTACCTCAAATGCCAGGCTCTATGAG1520.18469689053063904No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTAACCACCTATCTACCCC1460.17740622379916643No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCATGCCTATAATTCCAGC1450.17619111267725432No Hit
CATAGAACCAAAAATGGCTAGGCATGGGCATTGCTCTTGACATCTCTATG1440.17497600155534224No Hit
CATAGACACATGTAGGATGGGGTGGCTGTGATGGGCTGAGTAGGCCAGTC1430.17376089043343013No Hit
CATAGATCATGGGACTTCAGCATGGTGGTGTTTGCAGATTTGGACCTGCG1370.16647022370195755No Hit
CATAGAACCAAAAATGGCTAGGCATGTGGCTCACACCTGTAATCACAGCA1340.16282489033622125No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTATATTTTCTAAAGCCTGGG1330.16160977921430916No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG1330.16160977921430916No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACACAAGATATGAAAAATAA1320.16039466809239705No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1320.16039466809239705No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAAAAATTAGGCAGACG1290.15674933472666075No Hit
CATAGAGGTGTCCTTTCCCCACTTTATGTTTTTGATTGCTATGTTGAAGA1290.15674933472666075No Hit
CATAGAAAATAATGTGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGC1260.15310400136092445No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1250.15188889023901234No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1240.15067377911710025No Hit
CATAGAAAAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG1220.14824355687327606No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGATCTGCG1190.14459822350753976No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA1190.14459822350753976No Hit
CATAGAAAATAATGTGGCTGGGCATTGCTCTTGACATCTCTATGAGACCA1190.14459822350753976No Hit
CATAGATCATGGGACTTCAGCATGGCTAGACCCAGACCCCCGGATCTGAC1180.14338311238562765No Hit
CATAGAGGGTGCTCCTGTACTGGGTGTGCTGGGTAGTGGTAGTCTATGAG1180.14338311238562765No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG1160.14095289014180348No Hit
CATAGACACATGTAGGATGGGGTGGCTCCAGCTGGCGTCTGGCCCAGCAT1120.13609244565415507No Hit
CATAGAACCAAAAATGGCTAGGCATGTTGGCTCACACCTGTAATCACAGC1110.13487733453224296No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACAAAATATACAAAAATTAG1080.13123200116650668No Hit
CATAGACACATGTAGGATGGGGTGGCTCCTGTGCTGGGTAGTGGTAGTCT1050.12758666780077038No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG1030.1251564455569462No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1020.12394133443503408No Hit
CATAGACACATGTAGGATGGGGTGGCAGGGCAATGTTCACCACAGTGGTG1020.12394133443503408No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1010.12272622331312198No Hit
CATAGACTGGTCTCGAACTCCCAACCTCAAGTGATCTGCCCGTCTCACCC970.11786577882547358No Hit
CATAGAGGTGTCCTTTCCCCACTTTACTCTGTATTTCTCCTTCCTGCCAT970.11786577882547358No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTAAAAAAATTACAAAAATTAG950.11543555658164939No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGTGCTGGGTAGTGGTAGTCT950.11543555658164939No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGCTTTGGACCTGCG910.110575112094001No Hit
CATAGACACATGTAGGATGGGGTGGCTGTCATGATTATCACCTTCTATGA910.110575112094001No Hit
CATAGACACATGTAGGATGGGGTGGCTGGAGGGGGAGTGACCTCCTCAGG910.110575112094001No Hit
CATAGAGCTATCTGGCAAAAACCCATCTCTACTAAAAATACAAAAATTAG900.1093600009720889No Hit
CATAGACTGGTCTCGAACTCCCAACCTCAGGGTGATCTGCCCACCTTTGC870.1057146676063526No Hit
CATAGAACCAAAAATGGCTAGGCATGGTGGCTCACACCTGTAATCACAGC850.1032844453625284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)